|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
DE(pgl-grxA)502
,
OCR48,49-15
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
lysW
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
lysW
Search strains by all related name:
lysW b0745 ECK0734 JWR0020 lysTbeta su
|
General information (Go to Linear View: )
|
|
tRNA Name
|
lysW
|
|
Alternative name
|
b0745,ECK0734,JWR0020,lysTbeta,su
|
|
Location, Length
|
780,066 - 780,141
(
+
)
;
16.81
min
;
76
(bp) ,
|
|
Product
|
tRNA-Lys
|
|
Operon Name
|
lysT-valT-lysW
|
|
Note
|
anticodon: UUU
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTGTAGTATC CAGCGTAGTA TCGGGTGATT
-070 AGCTCAGCTG GGAGAGCACC TCCCTTACAA GGAGGGGGTC GGCGGTTCGA TCCCGTCATC ACCCACCACC
0001 gggtcgttag ctcagttggt agagcagttg acttttaatc aattggtcgc aggttcgaat cctgcacgac
0071 ccaccaGTTT TAACATCGAA GACAGATGTT AAGCGTGTAG GATAACGTTG CGTCAGCAAC GGCCCGTAGG
0141 GCGAGCGAAG CGAGTCATCC TGCACGACCC ACCACT
|
