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rRNA Report : rrfD
PEC Original Annotations
     Class non-essential
     References (PMID)
     Deletion OCL23 (D)  ,  OCL23-14 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  rrfD
Related strains
     Strains Search Search strains by gene name:  rrfD   Search strains by all related name:  rrfD b3274 ECK3261 JWR0075

General information  (Go to Linear View:)
 rRNA Name rrfD  
 Alternative name b3274,ECK3261,JWR0075  
 Location, Length 3,421,690 - 3,421,809 (  -  ) ;   73.75 min ; 120 (bp) , Go to Linear View
 Product 5S ribosomal RNA of rrnD operon  
 Operon Name rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF  
 Gene Ontology  
 EC number
  (KEGG Pathway)

 Linear View (Whole Mode)
View Location
   3410.0  –  3435.0 (KBP)

Homology Analysis
    PDB     (database updated : 2007.02.20 )
    SWISS-PROT     (database updated : 2007.02.20 )
    nr     (database updated : 2007.02.20 )
Pfam 28.0   (database updated : 2015-05 )

Other Cross-Reference
    EcoCyc rrfD 

MMBR References
Nucleic Acids Res. 1980;8:3793-3807
The distal end of the ribosomal RNA operon rrnD of Escherichia coli contains a tRNA1thr gene, two 5s rRNA genes and a transcription terminator.
Duester, G., and W. M. Holmes.
FEBS Lett. 1996;394(1):71-5.
5S rRNA sugar-phosphate backbone protection in complexes with specific ribosomal proteins.
Shpanchenko OV, Zvereva MI, Dontsova OA, Nierhaus KH, Bogdanov AA. ( 8925931 )

FASTA format

View sequence out neighbor 100bp
-100                                             ttaaccttac aacgccgaag ctgttttggc 
-070 ggatgagaga agattttcag cctgatacag attaaatcag aacgcagaag cggtctgata aaacagaatt 
0001 tgcctggcgg ccgtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac gccgtagcgc 
0071 cgatggtagt gtggggtctc cccatgcgag agtagggaac tgccaggcat caaatttagc gtgctgatat 
0141 ggctcagttg gtagagcgca cccttggtaa gggtgaggtc cccagttcga ctctgggtat cagcaccact 
0211 ttttaggtta