|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL52,53-1
(D)
,
OCL53
(D)
,
OCL53-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrfG
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rrfG
Search strains by all related name:
rrfG b2588 ECK2586 JWR0051
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrfG
|
|
Alternative name
|
b2588,ECK2586,JWR0051
|
|
Location, Length
|
2,724,091 - 2,724,210
(
-
)
;
58.71
min
;
120
(bp) ,
|
|
Product
|
5S ribosomal RNA of rrnG operon
|
|
Operon Name
|
rrsG-gltW-rrlG-rrfG
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Bacteriol. 1982;149(2):458-68.
Chromosomal locations of the genes for rRNA in Escherichia coli K-12.
Ellwood M, Nomura M.
(
6173374
)
|
FEBS Lett. 1996;394(1):71-5.
5S rRNA sugar-phosphate backbone protection in complexes with specific ribosomal proteins.
Shpanchenko OV, Zvereva MI, Dontsova OA, Nierhaus KH, Bogdanov AA.
(
8925931
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttaaccttac aacgccgaag ctgttttggc
-070 ggatgagaga agattttcag cctgatacag attaaatcag aacgcagaag cggtctgata aaacagaatt
0001 tgcctggcgg ccgtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac gccgtagcgc
0071 cgatggtagt gtggggtctc cccatgcgag agtagggaac tgccaggcat caaattatgc gaaaggccat
0141 cctgacggat ggcctttttg cattggcgca gaaaaaaatg cctgatgcga cgctgcgcgt cttatactcc
0211 cacatatgcc
|
