|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR36
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrfH
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rrfH
Search strains by all related name:
rrfH b0205 ECK0205 JWR0005
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrfH
|
|
Alternative name
|
b0205,ECK0205,JWR0005
|
|
Location, Length
|
228,756 - 228,875
(
+
)
;
4.93
min
;
120
(bp) ,
|
|
Product
|
5S ribosomal RNA of rrnH operon
|
|
Operon Name
|
rrsH-ileV-alaV-rrlH-rrfH
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Bacteriol. 1982;149(2):458-68.
Chromosomal locations of the genes for rRNA in Escherichia coli K-12.
Ellwood M, Nomura M.
(
6173374
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TAACCTTACA ACGCCGAAGC TGTTTTGGCG
-070 GATTGAGAGA AGATTTTCAG CCTGATACAG ATTAAATCAG AACGCAGAAG CGGTCTGATA AAACAGAATT
0001 tgcctggcgg ccgtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac gccgtagcgc
0071 cgatggtagt gtggggtctc cccatgcgag agtagggaac tgccaggcat CAAATTAAGC AGTAAGCCGG
0141 TCATAAAACC GGTGGTTGTA AAAGAATTCG GTGGAGCGGT AGTTCAGTCG GTTAGAATAC CTGCCTGTCA
0211 CGCAGGGGGT
|
