|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR10,11-11 (AK1-16 / BK2-16)
(D)
,
OCR10,11-16 (BK5-16 / AK7-16)
(D)
,
OCR10,11-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrfB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rrfB
Search strains by all related name:
rrfB b3971 ECK3963 JWR0102
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrfB
|
|
Alternative name
|
b3971,ECK3963,JWR0102
|
|
Location, Length
|
4,169,660 - 4,169,779
(
+
)
;
89.87
min
;
120
(bp) ,
|
|
Product
|
5S ribosomal RNA of rrnB operon
|
|
Operon Name
|
rrsB-gltT-rrlB-rrfB
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
FEBS Lett. 1996;394(1):71-5.
5S rRNA sugar-phosphate backbone protection in complexes with specific ribosomal proteins.
Shpanchenko OV, Zvereva MI, Dontsova OA, Nierhaus KH, Bogdanov AA.
(
8925931
)
|
Plasmid. 1981;6(1):112-8.
Construction and fine mapping of recombinant plasmids containing the rrnB ribosomal RNA operon of E. coli.
Brosius J, Ullrich A, Raker MA, Gray A, Dull TJ, Gutell RR, Noller HF.
(
7025054
)
|
J Mol Biol. 1981;148(2):107-27.
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.
Brosius J, Dull TJ, Sleeter DD, Noller HF.
(
7028991
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTAACCTTAC AACGCCGAAG CTGTTTTGGC
-070 GGATGAGAGA AGATTTTCAG CCTGATACAG ATTAAATCAG AACGCAGAAG CGGTCTGATA AAACAGAATT
0001 tgcctggcgg cagtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac gccgtagcgc
0071 cgatggtagt gtggggtctc cccatgcgag agtagggaac tgccaggcat CAAATAAAAC GAAAGGCTCA
0141 GTCGAAAGAC TGGGCCTTTC GTTTTATCTG TTGTTTGTCG GTGAACGCTC TCCTGAGTAG GACAAATCCG
0211 CCGGGAGCGG
|
