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PEC Original Annotations
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Essentiality
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|
Class
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non-essential
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References (PMID)
|
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Deletion
|
OCR10,11-11 (AK1-16 / BK2-16)
(D)
,
OCR10,11-16 (BK5-16 / AK7-16)
(D)
,
OCR10,11-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrsB
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Related strains
|
|
Strains Search
|
Search strains by gene name:
rrsB
Search strains by all related name:
rrsB b3968 ECK3960 JWR0099
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrsB
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|
Alternative name
|
b3968,ECK3960,JWR0099
|
|
Location, Length
|
4,164,682 - 4,166,223
(
+
)
;
89.76
min
;
1542
(bp) ,
|
|
Product
|
16S ribosomal RNA of rrnB operon
|
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Operon Name
|
rrsB-gltT-rrlB-rrfB
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Note
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Function
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Gene Ontology
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PID
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EC number
(KEGG Pathway)
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Homology Analysis
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BLAST
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Bacteria
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GTOP
|
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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SWISS-PROT
(database updated :
2007.02.20
)
|
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BLAST
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PSI-BLAST
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nr
(database updated :
2007.02.20
)
|
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BLAST
|
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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MMBR References
|
Biochem Cell Biol. 1995;73(11-12):925-31.
Variety of nonsense suppressor phenotypes associated with mutational changes at conserved sites in Escherichia coli ribosomal RNA.
Murgola EJ, Pagel FT, Hijazi KA, Arkov AL, Xu W, Zhao SQ.
(
8722008
)
|
J Bacteriol. 1987;169(4):1691-701.
In vivo translation of a region within the rrnB 16S rRNA gene of Escherichia coli.
Berg KL, Squires CL, Squires C.
(
2435709
)
|
Mol Gen Genet. 1979;172(2):171-8.
Isolation and restriction mapping of plasmids containing ribosomal DNA sequences from the rrn B cistron of E. coli.
Palmer ML, Raker MA, Kennedy PJ, Young JW, Barnes WM, Rodriguez RL, Noller HF.
(
384145
)
|
Nucleic Acids Res. 1992;20:1567-1571
Mutations in E. coli 16s rRNA that enhance and decrease the activity of a suppressor tRNA.
Prescott, C. D., and H. C. Kornau.
|
Biochim Biophys Acta. 1983;739(2):173-80.
Identification of two new promoters probably involved in the transcription of a ribosomal RNA gene of Escherichia coli.
Boros I, Csordas-Toth E, Kiss A, Kiss I, Torok I, Udvardy A, Udvardy K, Venetianer P.
(
6297582
)
|
Adv Genet. 1995;33:1-39.
Mutational analysis of 16S ribosomal RNA structure and function in Escherichia coli.
Triman KL.
(
7484450
)
|
Plasmid. 1981;6(1):112-8.
Construction and fine mapping of recombinant plasmids containing the rrnB ribosomal RNA operon of E. coli.
Brosius J, Ullrich A, Raker MA, Gray A, Dull TJ, Gutell RR, Noller HF.
(
7025054
)
|
J Mol Biol. 1981;148(2):107-27.
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.
Brosius J, Dull TJ, Sleeter DD, Noller HF.
(
7028991
)
|
Nucleic Acids Res. 1979;7:2189-2197
Structure of the promoter region for the rrnB gene in Escherichia coli.
Csordas-Toth, E., I. Boros, and P. Venetianer.
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATACGGATTC TTAACGTCGC AAGACGAAAA
-070 ATGAATACCA AGTCTCAAGA GTGAACACGT AATTCATTAC GAAGTTTAAT TCTTTGAGCG TCAAACTTTT
0001 aaattgaaga gtttgatcat ggctcagatt gaacgctggc ggcaggccta acacatgcaa gtcgaacggt
0071 aacaggaaga agcttgcttc tttgctgacg agtggcggac gggtgagtaa tgtctgggaa actgcctgat
0141 ggagggggat aactactgga aacggtagct aataccgcat aacgtcgcaa gaccaaagag ggggaccttc
0211 gggcctcttg ccatcggatg tgcccagatg ggattagcta gtaggtgggg taacggctca cctaggcgac
0281 gatccctagc tggtctgaga ggatgaccag ccacactgga actgagacac ggtccagact cctacgggag
0351 gcagcagtgg ggaatattgc acaatgggcg caagcctgat gcagccatgc cgcgtgtatg aagaaggcct
0421 tcgggttgta aagtactttc agcggggagg aagggagtaa agttaatacc tttgctcatt gacgttaccc
0491 gcagaagaag caccggctaa ctccgtgcca gcagccgcgg taatacggag ggtgcaagcg ttaatcggaa
0561 ttactgggcg taaagcgcac gcaggcggtt tgttaagtca gatgtgaaat ccccgggctc aacctgggaa
0631 ctgcatctga tactggcaag cttgagtctc gtagaggggg gtagaattcc aggtgtagcg gtgaaatgcg
0701 tagagatctg gaggaatacc ggtggcgaag gcggccccct ggacgaagac tgacgctcag gtgcgaaagc
0771 gtggggagca aacaggatta gataccctgg tagtccacgc cgtaaacgat gtcgacttgg aggttgtgcc
0841 cttgaggcgt ggcttccgga gctaacgcgt taagtcgacc gcctggggag tacggccgca aggttaaaac
0911 tcaaatgaat tgacgggggc ccgcacaagc ggtggagcat gtggtttaat tcgatgcaac gcgaagaacc
0981 ttacctggtc ttgacatcca cggaagtttt cagagatgag aatgtgcctt cgggaaccgt gagacaggtg
1051 ctgcatggct gtcgtcagct cgtgttgtga aatgttgggt taagtcccgc aacgagcgca acccttatcc
1121 tttgttgcca gcggtccggc cgggaactca aaggagactg ccagtgataa actggaggaa ggtggggatg
1191 acgtcaagtc atcatggccc ttacgaccag ggctacacac gtgctacaat ggcgcataca aagagaagcg
1261 acctcgcgag agcaagcgga cctcataaag tgcgtcgtag tccggattgg agtctgcaac tcgactccat
1331 gaagtcggaa tcgctagtaa tcgtggatca gaatgccacg gtgaatacgt tcccgggcct tgtacacacc
1401 gcccgtcaca ccatgggagt gggttgcaaa agaagtaggt agcttaacct tcgggagggc gcttaccact
1471 ttgtgattca tgactggggt gaagtcgtaa caaggtaacc gtaggggaac ctgcggttgg atcacctcct
1541 taCCTTAAAG AAGCGTACTT TGTAGTGCTC ACACAGATTG TCTGATAGAA AGTGAAAAGC AAGGCGTTTA
1611 CGCGTTGGGA GTGAGGCTGA AGAGAATAAG GC
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