|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR05
(D)
,
OCR05-12-1
(D)
,
OCR05-13
(D)
,
OCR05-5
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrfA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rrfA
Search strains by all related name:
rrfA b3855 ECK3847 JWR0096
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrfA
|
|
Alternative name
|
b3855,ECK3847,JWR0096
|
|
Location, Length
|
4,038,540 - 4,038,659
(
+
)
;
87.04
min
;
120
(bp) ,
|
|
Product
|
5S ribosomal RNA of rrnA operon
|
|
Operon Name
|
rrsA-ileT-alaT-rrlA-rrfA
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
J Bacteriol. 1982;149(2):458-68.
Chromosomal locations of the genes for rRNA in Escherichia coli K-12.
Ellwood M, Nomura M.
(
6173374
)
|
FEBS Lett. 1996;394(1):71-5.
5S rRNA sugar-phosphate backbone protection in complexes with specific ribosomal proteins.
Shpanchenko OV, Zvereva MI, Dontsova OA, Nierhaus KH, Bogdanov AA.
(
8925931
)
|
Nucleic Acids Res. 1979;6:1817-1830
Physical map of the seven ribosomal RNA genes of Escherichia coli.
Boros, I., A. Kiss, and P. Venetianer.
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TAACCTTACA ACGCCGAAGG TGTTTTGGCG
-070 GATTGAGAGA AGATTTTCAG CCTGATACAG ATTAAATCAG AACGCAGAAG CGGTCTGATA AAACAGAATT
0001 tgcctggcgg cagtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac gccgtagcgc
0071 cgatggtagt gtggggtctc ctcatgcgag agtagggaac tgccaggcat CAAATAAAAC GAAAGGCTCA
0141 GTCGGAAGAC TGGGCCTTTC GTTTTATCTG TTGTTTGTCG GTGAACGCTC TCCTGAGTAG GACAAATCCG
0211 CCGGGAGCGG
|
