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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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OCR05
(D)
,
OCR05-12-1
(D)
,
OCR05-13
(D)
,
OCR05-5
(D)
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Related gene (W3110 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
rrlA
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Related strains
|
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Strains Search
|
Search strains by gene name:
rrlA
Search strains by all related name:
rrlA b3854 ECK3846 JWR0095
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General information (Go to Linear View: )
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rRNA Name
|
rrlA
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Alternative name
|
b3854,ECK3846,JWR0095
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Location, Length
|
4,035,542 - 4,038,446
(
+
)
;
86.98
min
;
2905
(bp) ,
|
|
Product
|
23S ribosomal RNA of rrnA operon
|
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Operon Name
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rrsA-ileT-alaT-rrlA-rrfA
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Note
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Function
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Gene Ontology
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PID
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EC number
(KEGG Pathway)
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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PSI-BLAST
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nr
(database updated :
2007.02.20
)
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BLAST
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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MMBR References
|
J Bacteriol. 1982;149(2):458-68.
Chromosomal locations of the genes for rRNA in Escherichia coli K-12.
Ellwood M, Nomura M.
(
6173374
)
|
RNA 1996;2:1011-1021
In vitro complementation analysis localizes 23S rRNA posttranscriptional modifications that are required for Escherichia coli 50S ribosomal subunit assembly and function.
Green, R., and H. F. Noller.
|
J Mol Biol. 1995;254(5):838-47.
The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection.
O'Connor M, Dahlberg AE.
(
7500354
)
|
Proc Natl Acad Sci U S A. 1996;93:5641-5646
A functional peptide encoded in the Escherichia coli 23S rRNA.
Tenson, T., A. DeBlasio, and A. Mankin.
|
Nucleic Acids Res. 1979;6:1817-1830
Physical map of the seven ribosomal RNA genes of Escherichia coli.
Boros, I., A. Kiss, and P. Venetianer.
|
J Mol Biol. 1996;259(1):1-6.
Mutations in domain II of 23 S rRNA facilitate translation of a 23 S rRNA-encoded pentapeptide conferring erythromycin resistance.
Dam M, Douthwaite S, Tenson T, Mankin AS.
(
8648637
)
|
Science. 1992;257(5071):771-8.
Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes.
Daniels DL, Plunkett G 3rd, Burland VD, Blattner FR.
(
1379743
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CAAGCTGAAA ATTGAAACAC TGAACAACGA
-070 AAGTTGTTCG TGAGTCTCTC AAATTTTCGC AACACGATGA TGAATCGAAA GAAACATCTT CGGGTTGTGA
0001 ggttaagcga ctaagcgtac acggtggatg ccctggcagt cagaggcgat gaaggacgtg ctaatctgcg
0071 ataagcgtcg gtaaggtgat atgaaccgtt ataaccggcg atttccgaat ggggaaaccc agtgtgtttc
0141 gacacactat cattaactga atccataggt taatgaggcg aaccggggga actgaaacat ctaagtaccc
0211 cgaggaaaag aaatcaaccg agattccccc agtagcggcg agcgaacggg gagcagccca gagcctgaat
0281 cagtgtgtgt gttagtggaa gcgtctggaa aggcgtgcga tacagggtga cagccccgta cacaaaaatg
0351 cacatgctgt gagctcgatg agtagggcgg gacacgtggt atcctgtctg aatatggggg gaccatcctc
0421 caaggctaaa tactcctgac tgaccgatag tgaaccagta ccgtgaggga aaggcgaaaa gaaccccggc
0491 gaggggagtg aaaaagaacc tgaaaccgtg tacgtacaag cagtgggagc acgcttaggc gtgtgactgc
0561 gtaccttttg tataatgggt cagcgactta tattctgtag caaggttaac cgaatagggg agccgaaggg
0631 aaaccgagtc ttaactgggc gttaagttgc agggtataga cccgaaaccc ggtgatctag ccatgggcag
0701 gttgaaggtt gggtaacact aactggagga ccgaaccgac taatgttgaa aaattagcgg atgacttgtg
0771 gctgggggtg aaaggccaat caaaccggga gatagctggt tctccccgaa agctatttag gtagcgcctc
0841 gtgaattcat ctccgggggt agagcactgt ttcggcaagg gggtcatccc gacttaccaa cccgatgcaa
0911 actgcgaata ccggagaatg ttatcacggg agacacacgg cgggtgctaa cgtccgtcgt gaagagggaa
0981 acaacccaga ccgccagcta aggtcccaaa gtcatggtta agtgggaaac gatgtgggaa ggcccagaca
1051 gccaggatgt tggcttagaa gcagccatca tttaaagaaa gcgtaatagc tcactggtcg agtcggcctg
1121 cgcggaagat gtaacggggc taaaccatgc accgaagctg cggcagcgac actatgtgtt gttgggtagg
1191 ggagcgttct gtaagcctgt gaaggtgtgc tgtgaggcat gctggaggta tcagaagtgc gaatgctgac
1261 ataagtaacg ataaagcggg tgaaaagccc gctcgccgga agaccaaggg ttcctgtcca acgttaatcg
1331 gggcagggtg agtcgacccc taaggcgagg ccgaaaggcg tagtcgatgg gaaacaggtt aatattcctg
1401 tacttggtgt tactgcgaag gggggacgga gaaggctatg ttggccgggc gacggttgtc ccggtttaag
1471 cgtgtaggct ggttttccag gcaaatccgg aaaatcaagg ctgaggcgtg atgacgaggc actacggtgc
1541 tgaagcaaca aatgccctgc ttccaggaaa agcctctaag catcaggtaa catcaaatcg taccccaaac
1611 cgacacaggt ggtcaggtag agaataccaa ggcgcttgag agaactcggg tgaaggaact aggcaaaatg
1681 gtgccgtaac ttcgggagaa ggcacgctga tatgtaggtg aagcgacttg ctcgtggagc tgaaatcagt
1751 cgaagatacc agctggctgc aactgtttat taaaaacaca gcactgtgca aacacgaaag tggacgtata
1821 cggtgtgacg cctgcccggt gccggaaggt taattgatgg ggttagccgc aaggcgaagc tcttgatcga
1891 agccccggta aacggcggcc gtaactataa cggtcctaag gtagcgaaat tccttgtcgg gtaagttccg
1961 acctgcacga atggcgtaat gatggccagg ctgtctccac ccgagactca gtgaaattga actcgctgtg
2031 aagatgcagt gtacccgcgg caagacggaa agaccccgtg aacctttact atagcttgac actgaacatt
2101 gagccttgat gtgtaggata ggtgggaggc tttgaagtgt ggacgccagt ctgcatggag ccgaccttga
2171 aataccaccc tttaatgttt gatgttctaa cgttgacccg taatccgggt tgcggacagt gtctggtggg
2241 tagtttgact ggggcggtct cctcctaaag agtaacggag gagcacgaag gttggctaat cctggtcgga
2311 catcaggagg ttagtgcaat ggcataagcc agcttgactg cgagcgtgac ggcgcgagca ggtgcgaaag
2381 caggtcatag tgatccggtg gttctgaatg gaagggccat cgctcaacgg ataaaaggta ctccggggat
2451 aacaggctga taccgcccaa gagttcatat cgacggcggt gtttggcacc tcgatgtcgg ctcatcacat
2521 cctggggctg aagtaggtcc caagggtatg gctgttcgcc atttaaagtg gtacgcgagc tgggtttaga
2591 acgtcgtgag acagttcggt ccctatctgc cgtgggcgct ggagaactga ggggggctgc tcctagtacg
2661 agaggaccgg agtggacgca tcactggtgt tcgggttgtc atgccaatgg cactgcccgg tagctaaatg
2731 cggaagagat aagtgctgaa agcatctaag cacgaaactt gccccgagat gagttctccc tgactccttg
2801 agagtcctga aggaacgttg aagacgacga cgttgatagg ccgggtgtgt aagcgcagcg atgcgttgag
2871 ctaaccggta ctaatgaacc gtgaggctta accttACAAC GCCGAAGGTG TTTTGGCGGA TTGAGAGAAG
2941 ATTTTCAGCC TGATACAGAT TAAATCAGAA CGCAGAAGCG GTCTGATAAA ACAGAATTTG CCTGG
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