|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR01,2-3 (AK4-14 / BK5-14)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrfC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rrfC
Search strains by all related name:
rrfC b3759 ECK3753 JWR0085
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrfC
|
|
Alternative name
|
b3759,ECK3753,JWR0085
|
|
Location, Length
|
3,944,723 - 3,944,842
(
+
)
;
85.02
min
;
120
(bp) ,
|
|
Product
|
5S ribosomal RNA of rrnC operon
|
|
Operon Name
|
rrsC-gltU-rrlC-rrfC
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
FEBS Lett. 1996;394(1):71-5.
5S rRNA sugar-phosphate backbone protection in complexes with specific ribosomal proteins.
Shpanchenko OV, Zvereva MI, Dontsova OA, Nierhaus KH, Bogdanov AA.
(
8925931
)
|
J Biol Chem. 1979;254:12725-12731
Transcription termination in the Escherichia coli ribosomal RNA operon rrnC.
Young, R. A.
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTAACCTTAC AACGCCGAAG ATGTTTTGGC
-070 GGATGAGAGA AGATTTTCAG CCTGATACAG ATTAAATCAG AACGCAGAAG CGGTCTGATG AAACAGAATT
0001 tgcctggcgg ccgtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac gccgtagcgc
0071 cgatggtagt gtggggtctc cccatgcgag agtagggaac tgccaggcat CAAATTAAGC AGTAAGCCGG
0141 TCATAAAACC GGTGGTTGTA AAAGAATTCG GTGGAGCGGT AGTTCAGTCG GTTAGAATAC CTGCCTGTCA
0211 CGCAGGGGGT
|
