MG1655
W3110
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Gene Report : rutD
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion 17 (LD)  ,  OCR57,60-3 (LD 17C_CRS) (D)  ,  OCR57,60-4 (LD 17C_P/O) (D)  ,  OCR58 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  rutD
Related strains
     Strains Search Search strains by gene name:  rutD   Search strains by all related name:  rutD b1009 ECK1000 f266 f266b JW0994 rarA ycdJ

General information  (Go to Linear View:)
 Gene Name rutD  
 Alternative name b1009,ECK1000,f266,f266b,JW0994,rarA,ycdJ  
 Location, Length 1,070,188 - 1,070,988 (  -  ) ;   23.07 min ; 801 (bp) ,   266 (aa) Go to Linear View
 Product putative aminoacrylate hydrolase, reactive intermediate detoxification  
 Operon Name rutABCDEFG  
 Note  
 Function enzyme; Pyrimidine nitrogen catabolism  
 Gene Ontology GO:0000166; nucleotide binding ( rarA )
GO:0005515; protein binding ( rarA )
GO:0005524; ATP binding ( rarA )
GO:0016787; hydrolase activity ( rutD )
GO:0017111; nucleoside-triphosphatase activity ( rarA )
 PID 1787244  
 EC number
  (KEGG Pathway)
 
 
SWISS-PROT  ( Show details )
  botton Entry name(Acc.no) YCDJ_ECOLI ( P75895 )
    -  Protein name Hypothetical protein ycdJ.  
    -  Synonyms  
    -  Gene name Name=ycdJ; OrderedLocusNames=b1009;  

 Linear View (Whole Mode)
View Location
   1060.0  –  1085.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP rarA (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Human Soluble Epoxide Hydrolase  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Protein rutD  
         PSI-BLAST Protein rutD
    nr     (database updated : 2007.02.20 )
         BLAST predicted hydrolase [Escherichia coli K12]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    GLYCOSAMINOGLYCAN    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL     

Other Cross-Reference
    COG COG0596R 
    EcoCyc rutD 

Sequences
Amino acid
FASTA format
0001 MKLSLSPPPY ADAPVVVLIS GLGGSGSYWL PQLAVLEQEY QVVCYDQRGT GNNPDTLAED YSIAQMAAEL 
0071 HQALVAAGIE HYAVVGHALG ALVGMQLALD YPASVTVLIS VNGWLRINAH TRRCFQVRER LLYSGGAQAW 
0141 VEAQPLFLYP ADWMAARAPR LEAEDALALA HFQGKNNLLR RLNALKRADF SHHADRIRCP VQIICASDDL 
0211 LVPTACSSEL HAALPDSQKM VMPYGGHACN VTDPETFNAL LLNGLASLLH HREAAL

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             ggtgataaac cggcgcgatt ctgcattcag 
-070 tgcggactgg taaaacctga cgcgctggtg gaaatcgcca caattgcgca tatcgccaag tgaggccgcg 
0001 atgaaacttt cactctcacc tcccccttat gctgatgcgc ccgtagtggt gttgatttcg ggtcttgggg 
0071 gtagcggcag ttactggtta ccgcaactgg cggtgctgga gcaggagtat caggtagtct gttacgacca 
0141 gcgcggcacc ggcaataatc ccgacacgct ggcagaagat tacagtatcg cccagatggc agcggaactg 
0211 catcaggcgc tggtagccgc agggattgag cattacgcag tggtcggcca tgcgctcggt gcgctggtgg 
0281 gaatgcagct ggcgctggat tatcccgcgt cggtaactgt gctgatcagc gttaacggct ggctacgaat 
0351 aaacgcccat acgcgccgct gttttcaggt tcgcgaacga ttactgtata gcggcggcgc gcaggcatgg 
0421 gtggaagcgc agccgttgtt cctctatccc gccgactgga tggcggcccg cgcacctcgc ctggaggcag 
0491 aagacgcgct ggcactggcg cattttcagg gcaaaaataa tttactgcgt cgacttaacg ccctcaaacg 
0561 cgctgacttt agtcaccatg cggatcgcat ccgctgcccg gtgcaaatca tctgcgccag tgatgatctg 
0631 ctggtgccaa cagcatgttc cagtgaactt catgccgccc tgcccgatag ccagaaaatg gtgatgccct 
0701 atggcggaca cgcctgcaac gtgaccgatc ccgaaacgtt taatgctctg ttactcaacg ggcttgccag 
0771 cctgttacat caccgtgaag ccgccctgta aggaattgct atgaacgaag ccgttagccc aggtgcgctt 
0841 agcaccctgt tcaccgatgc ccgcactcac aacggctggc gggagacacc cgtcagcgat g