MG1655
W3110
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Gene Report : rarA
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  rarA
Related strains
     Strains Search Search strains by gene name:  rarA   Search strains by all related name:  rarA b0892 ECK0883 JW0875 mgsA ycaJ

General information  (Go to Linear View:)
 Gene Name rarA  
 Alternative name b0892,ECK0883,JW0875,mgsA,ycaJ  
 Location, Length 937,217 - 938,560 (  +  ) ;   20.20 min ; 1344 (bp) ,   447 (aa) Go to Linear View
 Product DNA-dependent ATPase involved in processing recombination intermediates at replication forks  
 Operon Name lolA-rarA  
 Note putative polynucleotide enzyme  
 Function putative enzyme; Not classified  
 Gene Ontology GO:0000166; nucleotide binding ( rarA )
GO:0005515; protein binding ( rarA )
GO:0005524; ATP binding ( rarA )
GO:0005737; cytoplasm ( mgsA )
GO:0008929; methylglyoxal synthase activity ( mgsA )
GO:0016829; lyase activity ( mgsA )
GO:0017111; nucleoside-triphosphatase activity ( rarA )
GO:0019242; methylglyoxal biosynthetic process ( mgsA )
 PID 1787119  
 EC number
  (KEGG Pathway)
 
 
SWISS-PROT  ( Show details )
  botton Entry name(Acc.no) YCAJ_ECOLI ( P45526 ; P75833 )
    -  Protein name Hypothetical protein ycaJ.  
    -  Synonyms  
    -  Gene name Name=ycaJ; OrderedLocusNames=b0892, c1029, z1238, ECs0977;  

 Linear View (Whole Mode)
View Location
   925.0  –  950.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP ycaJ (  homologous genes of other bacterias  )   mgsA (  homologous genes of other bacterias  )   rarA (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Replication Factor C Adpnp Complex  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Hypothetical protein ycaJ  
         PSI-BLAST Chaperone clpB
    nr     (database updated : 2007.02.20 )
         BLAST putative polynucleotide enzyme [Escherichia coli O157:H7 str. Sakai]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    TYR_PHOSPHO_SITE    MYRISTYL    AMIDATION    ATP_GTP_A     

Other Cross-Reference
    COG COG2256L 
    EcoCyc rarA 

Sequences
Amino acid
FASTA format
0001 MSNLSLDFSD NTFQPLAARM RPENLAQYIG QQHLLAAGKP LPRAIEAGHL HSMILWGPPG TGKTTLAEVI 
0071 ARYANADVER ISAVTSGVKE IREAIERARQ NRNAGRRTIL FVDEVHRFNK SQQDAFLPHI EDGTITFIGA 
0141 TTENPSFELN SALLSRARVY LLKSLSTEDI EQVLTQAMED KTRGYGGQDI VLPDETRRAI AELVNGDARR 
0211 ALNTLEMMAD MAEVDDSGKR VLKPELLTEI AGERSARFDN KGDRFYDLIS ALHKSVRGSA PDAALYWYAR 
0281 IITAGGDPLY VARRCLAIAS EDVGNADPRA MQVAIAAWDC FTRVGPAEGE RAIAQAIVYL ACAPKSNAVY 
0351 TAFKAALADA RERPDYDVPV HLRNAPTKLM KEMGYGQEYR YAHDEANAYA AGEVYFPPEI AQTRYYFPTN 
0421 RGLEGKIGEK LAWLAEQDQN SPIKRYR

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             CTGAAATCCC AGCAAAATGG GGCTGTGGAT 
-070 GCAGCGAAAT TTACCTTCAC CCCGCCGCAA GGCGTCACGG TAGATGATCA ACGTAAGTAG AGGCACCTGA 
0001 gtgagcaatc tgtcgctcga tttttcggat aatacttttc aacctctggc cgcgcgtatg cggccagaaa 
0071 atttagcaca gtatatcggc cagcaacatt tgctggctgc ggggaagccg ttgccgcgcg ctatcgaagc 
0141 cgggcattta cattctatga tcctctgggg gccgccgggt accggcaaaa caactctcgc tgaagtgatt 
0211 gcccgctatg cgaacgctga tgtggaacgt atttctgccg tcacctctgg cgtgaaagag attcgcgagg 
0281 cgatcgagcg cgcccggcaa aaccgcaatg caggtcgccg cactattctt tttgttgacg aagttcaccg 
0351 tttcaacaaa agccagcagg atgcatttct gccacatatt gaagacggca ccatcacttt tattggcgca 
0421 accactgaaa acccgtcgtt tgagcttaat tcggcactgc tttcccgtgc ccgtgtctat ctgttgaaat 
0491 ccctgagtac agaggatatt gagcaagtac taactcaggc gatggaagac aaaacccgtg gctatggtgg 
0561 tcaggatatt gttctgccag atgaaacacg acgcgccatt gctgaactgg tgaatggcga cgcgcgccgg 
0631 gcgttaaata cgctggaaat gatggcggat atggccgaag tcgatgatag cggtaagcgg gtcctgaagc 
0701 ctgaattact gaccgaaatc gccggtgaac gtagcgcccg ctttgataac aaaggcgatc gcttttacga 
0771 tctgatttcc gcactgcata agtcggtacg tggtagcgca cccgatgcgg cgctgtactg gtatgcgcga 
0841 attattaccg ctggtggcga tccgttatat gtcgcgcgtc gctgtctggc gattgcgtct gaagacgtcg 
0911 gtaatgccga tccacgggcg atgcaggtgg caattgcggc ctgggattgc tttactcgcg ttggcccggc 
0981 ggaaggtgaa cgcgccattg ctcaggcgat tgtttacctg gcctgcgcgc caaaaagcaa cgctgtctac 
1051 actgcgttta aagccgcgct ggccgatgct cgcgaacgcc cggattatga cgtgccggtt catttgcgta 
1121 atgcgccgac gaaattaatg aaggaaatgg gctacgggca ggaatatcgt tacgctcatg atgaagcaaa 
1191 cgcttatgct gccggtgagg tttacttccc gccggaaata gcacaaacac gctattattt cccgacaaac 
1261 aggggccttg aaggcaagat tggcgaaaag ctcgcctggc tggctgaaca ggatcaaaat agccccataa 
1331 aacgctaccg ttaaTGTTAT CGTTGCGGTA ATGTTGTTAC TGTATCCCTG TGGTCGCAGG CTGTGGCCAC 
1401 ATCTCCCATT TAATTCGATA AGCACAGGAT AAGCATGCTC GATC