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PEC Original Annotations
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Essentiality
|
|
Class
|
non-essential
|
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References (PMID)
|
|
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Deletion
|
15
(LD)
,
DE(pgl-grxA)502
,
15+dps
(LD)
,
OCR48,50-8 (LD 15D::Cm)
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
deoR
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
deoR
Search strains by all related name:
deoR b0840 ECK0830 JW0824 nucR nupG tsc
|
General information (Go to Linear View: )
|
|
Gene Name
|
deoR
|
|
Alternative name
|
b0840,ECK0830,JW0824,nucR,nupG,tsc
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|
Location, Length
|
881,199 - 881,957
(
-
)
;
18.99
min
;
759
(bp) ,
252
(aa)
|
|
Product
|
DNA-binding transcriptional repressor
|
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Operon Name
|
deoR
|
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Note
|
transcriptional repressor for deo operon, tsx, nupG; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO_process: GO:0006350 - transcription
|
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Function
|
regulator; Salvage of nucleosides and nucleotides
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( deoR )
GO:0003700
;
transcription factor activity ( deoR )
GO:0005215
;
transporter activity ( nupG )
GO:0005337
;
nucleoside transmembrane transporter activity ( nupG )
GO:0005622
;
intracellular ( deoR )
GO:0005886
;
plasma membrane ( nupG )
GO:0006350
;
transcription ( deoR )
GO:0006355
;
regulation of transcription, DNA-dependent ( deoR )
GO:0006810
;
transport ( nupG )
GO:0015858
;
nucleoside transport ( nupG )
GO:0016020
;
membrane ( nupG )
GO:0016021
;
integral to membrane ( nupG )
|
|
PID
|
1787063
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
3
more]
)
|
Entry name(Acc.no)
|
DEOR_ECOLI
(
P06217
)
|
|
- Protein name
|
Deoxyribose operon repressor.
|
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- Synonyms
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- Gene name
|
OrderedLocusNames=b0840, c0925, z1067, ECs0920;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
deoR
(
homologous genes of other bacterias
)
nupG
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Deoxyribose operon repressor
|
|
PSI-BLAST
|
Glycerol-3-phosphate regulon repressor
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
|
transcriptional repressor for deo operon, tsx, nupG [Escherichia coli O157:H7 EDL933]
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|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
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PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
HTH_DEOR_FAMILY
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MMBR References
|
EMBO J. 1989;8:325-331
Purification and characterization of the deoR repressor of Escherichia coli.
Mortensen, L., G. Dandanell, and K. Hammer.
|
Eur J Biochem. 1972;27(2):208-15.
Mutants constitutive for nucleoside-catabolizing enzymes in Escherichia coli K12. Isolation, charactrization and mapping.
Munch-Petersen A, Nygaard P, Hammer-Jespersen K, Fiil N.
(
4559263
)
|
Nucleic Acids Res. 1985;13:5927-5936
The primary structure of the deoR repressor from the Escherichia coli K-12.
Valentin-Hansen, P., P. Hojrup, and S. A. Short.
|
| Sequences |
Amino acid
FASTA format
|
0001 METRREERIG QLLQELKRSD KLHLKDAAAL LGVSEMTIRR DLNNHSAPVV LLGGYIVLEP RSASHYLLSD
0071 QKSRLVEEKR RAAKLAATLV EPDQTLFFDC GTTTPWIIEA IDNEIPFTAV CYSLNTFLAL KEKPHCRAFL
0141 CGGEFHASNA IFKPIDFQQT LNNFCPDIAF YSAAGVHVSK GATCFNLEEL PVKHWAMSMA QKHVLVVDHS
0211 KFGKVRPARM GDLKRFDIVV SDCCPEDEYV KYAQTQRIKL MY
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ctgttttgca ttaccgatcc gcaaaggctg
-070 ggtgcgtgac tgatctctgc taaaaagtgt agtattgagc ggctcgcttc aataactatt cagagggatt
0001 atggaaacac gtcgcgaaga gcgtatcggg cagctgctgc aagaattaaa acgcagcgat aagttacatc
0071 ttaaagacgc cgccgccctg cttggggttt cggagatgac gattcgtcgc gatctgaaca accacagtgc
0141 gcccgtcgtt ttgctcggcg gctatattgt tctggaaccg cgcagtgcca gccattacct gttaagcgat
0211 caaaaatccc gcctggtgga agaaaaacgc cgggcggcaa aactggctgc gacgctggta gaacccgatc
0281 agaccctctt ttttgactgt ggcaccacca cgccgtggat tattgaagcg attgataatg aaatcccttt
0351 taccgccgtt tgttattcgc taaatacctt tctggcgctg aaagagaaac cccattgccg cgcgtttctt
0421 tgcggtggtg aatttcacgc cagcaacgcc attttcaaac ccatcgattt tcagcaaacg ctgaataatt
0491 tttgcccgga tatcgctttt tattctgcgg cgggcgtgca tgtcagtaaa ggcgctacct gttttaatct
0561 tgaagagttg ccggtaaaac actgggccat gtcgatggcg caaaagcatg tgctggttgt cgaccacagt
0631 aaatttggca aggtgcgtcc ggcgcgcatg ggtgacctga aacgctttga tattgtggtg agcgattgtt
0701 gcccggaaga tgagtatgtg aagtacgcgc agacgcagcg cattaagttg atgtattaat gacgtataac
0771 cggatgacgt ttcgcgccat ccggttatca gaagattaag agaaccagct gccgaaccac tgatggaatt
0841 tcatcatcac gaaatccca
|
