MG1655
W3110
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Gene Report : araA
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion OCR29 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  araA
Related strains
     Strains Search Search strains by gene name:  araA   Search strains by all related name:  araA b0062 ECK0063 JW0061

General information  (Go to Linear View:)
 Gene Name araA  
 Alternative name b0062,ECK0063,JW0061  
 Location, Length 66,835 - 68,337 (  -  ) ;   1.44 min ; 1503 (bp) ,   500 (aa) Go to Linear View
 Product L-arabinose isomerase  
 Operon Name araBAD  
 Note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process  
 Function enzyme; Degradation of small molecules: Carbon compounds  
 Gene Ontology GO:0005975; carbohydrate metabolic process ( araA )
GO:0008152; metabolic process ( araA )
GO:0008733; L-arabinose isomerase activity ( araA )
GO:0016853; isomerase activity ( araA )
GO:0019568; arabinose catabolic process ( araA )
GO:0030145; manganese ion binding ( araA )
GO:0046872; metal ion binding ( araA )
 PID 1786248  
 EC number
  (KEGG Pathway)
 
5.3.1.4  
SWISS-PROT  ( Show details [ 2 more] )
  botton Entry name(Acc.no) ARAA_ECOLI ( P08202 ; P78040 )
    -  Protein name L-arabinose isomerase  
    -  Synonyms EC 5.3.1.4  
    -  Gene name Name=araA; OrderedLocusNames=b0062;  

 Linear View (Whole Mode)
View Location
   55.0  –  80.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP araA (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST L-arabinose isomerase  
         PSI-BLAST L-arabinose isomerase
    nr     (database updated : 2007.02.20 )
         BLAST L-arabinose isomerase [Escherichia coli K12]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    TYR_PHOSPHO_SITE    MYRISTYL    AMIDATION     

Other Cross-Reference
    COG COG2160G 
    EcoCyc araA 

MMBR References
Gene. 1986;47(2-3):231-44.
The organization of the araBAD operon of Escherichia coli.
Lee N, Gielow W, Martin R, Hamilton E, Fowler A. ( 3549454 )

Sequences
Amino acid
FASTA format
0001 MTIFDNYEVW FVIGSQHLYG PETLRQVTQH AEHVVNALNT EAKLPCKLVL KPLGTTPDEI TAICRDANYD 
0071 DRCAGLVVWL HTFSPAKMWI NGLTMLNKPL LQFHTQFNAA LPWDSIDMDF MNLNQTAHGG REFGFIGARM 
0141 RQQHAVVTGH WQDKQAHERI GSWMRQAVSK QDTRHLKVCR FGDNMREVAV TDGDKVAAQI KFGFSVNTWA 
0211 VGDLVQVVNS ISDGDVNALV DEYESCYTMT PATQIHGKKR QNVLEAARIE LGMKRFLEQG GFHAFTTTFE 
0281 DLHGLKQLPG LAVQRLMQQG YGFAGEGDWK TAALLRIMKV MSTGLQGGTS FMEDYTYHFE KGNDLVLGSH 
0351 MLEVCPSIAA EEKPILDVQH LGIGGKDDPA RLIFNTQTGP AIVASLIDLG DRYRLLVNCI DTVKTPHSLP 
0421 KLPVANALWK AQPDLPTASE AWILAGGAHH TVFSHALNLN DMRQFAEMHD IEITVIDNDT RLPAFKDALR 
0491 WNEVYYGFRR 

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             cgctatcagc aatgggcgat gagcgccgaa 
-070 caacactatc ttccaacttc cgccccggca caggctgccc aggccgttgc gactctataa ggacacgata 
0001 atgacgattt ttgataatta tgaagtgtgg tttgtcattg gcagccagca tctgtatggc ccggaaaccc 
0071 tgcgtcaggt cacccaacat gccgagcacg tcgttaatgc gctgaatacg gaagcgaaac tgccctgcaa 
0141 actggtgttg aaaccgctgg gcaccacgcc ggatgaaatc accgctattt gccgcgacgc gaattacgac 
0211 gatcgttgcg ctggtctggt ggtgtggctg cacaccttct ccccggccaa aatgtggatc aacggcctga 
0281 ccatgctcaa caaaccgttg ctgcaattcc acacccagtt caacgcggcg ctgccgtggg acagtatcga 
0351 tatggacttt atgaacctga accagactgc acatggcggt cgcgagttcg gcttcattgg cgcgcgtatg 
0421 cgtcagcaac atgccgtggt taccggtcac tggcaggata aacaagccca tgagcgtatc ggctcctgga 
0491 tgcgtcaggc ggtctctaaa caggataccc gtcatctgaa agtctgccga tttggcgata acatgcgtga 
0561 agtggcggtc accgatggcg ataaagttgc cgcacagatc aagttcggtt tctccgtcaa tacctgggcg 
0631 gttggcgatc tggtgcaggt ggtgaactcc atcagcgacg gcgatgttaa cgcgctggtc gatgagtacg 
0701 aaagctgcta caccatgacg cctgccacac aaatccacgg caaaaaacga cagaacgtgc tggaagcggc 
0771 gcgtattgag ctggggatga agcgtttcct ggaacaaggt ggcttccacg cgttcaccac cacctttgaa 
0841 gatttgcacg gtctgaaaca gcttcctggt ctggccgtac agcgtctgat gcagcagggt tacggctttg 
0911 cgggcgaagg cgactggaaa actgccgccc tgcttcgcat catgaaggtg atgtcaaccg gtctgcaggg 
0981 cggcacctcc tttatggagg actacaccta tcacttcgag aaaggtaatg acctggtgct cggctcccat 
1051 atgctggaag tctgcccgtc gatcgccgca gaagagaaac cgatcctcga cgttcagcat ctcggtattg 
1121 gtggtaagga cgatcctgcc cgcctgatct tcaataccca aaccggccca gcgattgtcg ccagcttgat 
1191 tgatctcggc gatcgttacc gtctactggt taactgcatc gacacggtga aaacaccgca ctccctgccg 
1261 aaactgccgg tggcgaatgc gctgtggaaa gcgcaaccgg atctgccaac tgcttccgaa gcgtggatcc 
1331 tcgctggtgg cgcgcaccat accgtcttca gccatgcact gaacctcaac gatatgcgcc aattcgccga 
1401 gatgcacgac attgaaatca cggtgattga taacgacaca cgcctgccag cgtttaaaga cgcgctgcgc 
1471 tggaacgaag tgtattacgg gtttcgtcgc taagtagccg catccggtat gtaacgcctg atgcgacgct 
1541 gacgcgtctt atctggccta cacgctgcga ttttgtaggc cggataagca aagcgcatcc ggc