|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR45,46-3
(D)
,
OCR46
(D)
,
OCR46-7
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybeF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybeF
Search strains by all related name:
ybeF b0629 ECK0622 f266 JW0624
|
General information (Go to Linear View: )
|
|
Gene Name
|
ybeF
|
|
Alternative name
|
b0629,ECK0622,f266,JW0624
|
|
Location, Length
|
659,648 - 660,601
(
-
)
;
14.22
min
;
954
(bp) ,
317
(aa)
|
|
Product
|
putative DNA-binding transcriptional regulator
|
|
Operon Name
|
ybeF
|
|
Note
|
putative transcriptional regulator LYSR-type; GO_function: GO:0016563 - transcription activator activity; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription
|
|
Function
|
putative regulator; Not classified
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( ybeF )
GO:0003700
;
transcription factor activity ( ybeF )
GO:0006350
;
transcription ( ybeF )
GO:0006355
;
regulation of transcription, DNA-dependent ( ybeF )
|
|
PID
|
87081766
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YBEF_ECOLI
(
P30979
;
P75727; P77105
)
|
|
- Protein name
|
Putative HTH-type transcriptional regulator ybeF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybeF; OrderedLocusNames=b0629;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybeF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Dntr From Burkholderia Sp. Strain Dnt In Complex With Thiocyanate
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putative HTH-type transcriptional regulator ybeF
|
|
PSI-BLAST
|
Nodulation protein D
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted DNA-binding transcriptional regulator [Escherichia coli W3110]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MDSNNQIEPC LSRKSSEGKP QIFTTLRNID LNLLTIFEAV YVHKGIVNAA KVLNLTPSAI SQSIQKLRVI
0071 FPDPLFIRKG QGVTPTAFAM HLHEYISQGL ESILGALDIE GSYDKQRTIT IATTPSVGAL VLPVIYRAIK
0141 THYPQLLLRN PPISDAENQL SQFQTDLIID NMFCTNRTVQ HHVLFTDNMV LICREGNPLL SLEDDRETID
0211 NAAHVLLLPE EQNFSGLRQR VQEMFPDRQI NFTSYNILTI AALVANSDML AIIPSRFYNL FSRCWPLEKL
0281 PFPSLNEEQI DFSIHYNKFS LRDPILHGVI DVIRNAF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 agttgattat ggtgagcaaa agcgttccgt
-070 tccaattaga cataagatta ttgtaatttt ttaaatatta tttttccatg aataaaattg gagtaagtgc
0001 gtggatagta ataatcaaat tgaaccctgt ttaagcagaa agtcgtcaga aggtaaacca caaatattta
0071 caaccttacg aaatattgat cttaaccttc tgactatttt tgaagctgta tatgtacata aagggatcgt
0141 taatgcagcg aaagtgctta atctgacccc ctcggcaatc agtcagtcta ttcagaaact gcgcgttata
0211 ttccctgacc cattgtttat tcgcaaaggc cagggtgtca ctcctaccgc atttgcgatg catctacatg
0281 agtatatcag tcagggcctt gagtccattc ttggcgcgct ggatatcgaa ggaagctatg ataagcaacg
0351 aacgataact attgcgacca ctccctcggt cggagcactg gtccttcctg tcatctatcg ggcgattaaa
0421 actcactatc cgcagctttt actgcgcaac ccgcccatca gcgacgcgga aaaccaactc agtcagtttc
0491 aaaccgatct catcatcgat aacatgtttt gcaccaatcg tacggtgcaa catcatgttc tgttcaccga
0561 caatatggtg ttaatttgcc gcgagggaaa tccactactc tctttagaag atgacagaga gactatcgac
0631 aacgctgcgc atgtacttct gttaccggaa gagcaaaatt tcagcggtct gcggcagaga gttcaagaaa
0701 tgtttccgga ccggcaaatc aatttcacca gctacaacat tttgacaatc gctgcactgg ttgccaacag
0771 tgacatgtta gcgattattc ccagccgttt ttataacctg tttagccgct gctggccgct ggaaaaactg
0841 ccttttccgt ccttaaatga ggagcaaata gatttctcta tccactacaa caaattcagc ctgcgtgatc
0911 ccatcctgca cggagtaata gatgttatcc gtaatgcatt ttgaaaaagt attgttacag ccagatcaca
0981 gcgcagaacg ataaaatggc acaatccaac aacaatttta cattttcgcg accgctttgg ctgctttcag
1051 gtcc
|
