|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR29
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yabP
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yabP
Search strains by all related name:
yabP b0056 b0057 b4659 ECK0057 JW0055 yabQ
|
General information (Go to Linear View: )
|
|
Gene Name
|
yabP
|
|
Alternative name
|
b0056,b0057,b4659,ECK0057,JW0055,yabQ
|
|
Location, Length
|
58,474 - 59,269
(
+
)
;
1.26
min
;
796
(bp) ,
264
(aa)
|
|
Product
|
|
|
Operon Name
|
yabPQ
|
|
Note
|
pseudogene
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YABP_ECOLI
(
P39220
;
P75632; Q8KJP8
)
|
|
- Protein name
|
Hypothetical protein yabP.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yabP; OrderedLocusNames=b0056;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yabP
(
homologous genes of other bacterias
)
yabQ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yabP
|
|
PSI-BLAST
|
Hypothetical protein yabP
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b0056 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCTTAAAAAT AAAAAACACA TACCTGAATG
-070 AGCGATTTTT GAAAGTATAT TTATTCAGAA CGCGCATCAT GAGTTTTTAA CTCAATGCGA GGCTATTACC
0001 atgaaagtat cagttccagg catgccggtt acacttttaa atatgagcaa gaacgatatt tataagatgg
0071 tgagcgggga caagatggac gtgaagatga atatctttca acgcttgtgg gagacgttac gccatctgtt
0141 ctggtcagat aaacagactg aggcttataa acttctgttc aatttcgtga ataaccagac tggcaacatc
0211 aacgcctcag aatactttac tggggctatc aacgagaatg agagagaaaa gtttatcaat agcctggaat
0281 tattcaataa acttaaaaca tgcgcaaaaa atccggatga gttggtcgca aagggcaata tgcgctgggt
0351 cgcccagacc ttcggggata tcgagttaag tgtcactttt ttcattgaaa agaataagat atgtactcag
0421 acgttgcagc tgcataaggg ccaaggtaac ttgggcgttg atcttagaaa ggcttacctt cccggcgttg
0491 acatgaggga ttgttacctt ggtaaaaaaa caatgaaagg tagcaatgat atcctttatg agagacctgg
0561 gtggaatgct aacctgggcg tgctaccccg gacggtgcta ccccggacgg tgctaacccg gacggtgcta
0631 acctggacgg tgctaccgtg aacggtgcta cctccttata tgatgaggta attattatta ataaaatccc
0701 ccccaaaaaa attgatacta aaggagttgc tactgaagaa gttgctacta aaaaagtact gctgaacaaa
0771 ttactgacaa cgcaattatt gaatgaGCCA GAATAAGCTA AGGTTGAAGG GGCTGGAACG CCCCTTCAAC
0841 CTTAGCAGTA GCGTGGGATG ATTTCACAAT TAGAAAGACC TGCATGATGA GCTAGA
|
