|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(ompT-fepC)266
,
LD3-15-1Y
(LD)
,
OCR44,45-2 (LD 12-1_P/O)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
nfrA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
nfrA
Search strains by all related name:
nfrA b0568 ECK0560 JW0557
|
General information (Go to Linear View: )
|
|
Gene Name
|
nfrA
|
|
Alternative name
|
b0568,ECK0560,JW0557
|
|
Location, Length
|
587,205 - 590,177
(
-
)
;
12.66
min
;
2973
(bp) ,
990
(aa)
|
|
Product
|
bacteriophage N4 receptor, outer membrane subunit
|
|
Operon Name
|
nfrBA
|
|
Note
|
bacteriophage N4 receptor, outer membrane protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane
|
|
Function
|
membrane; Phage-related functions and prophages,6.1 cell structure; membrane,7.4 location of gene products; outer membrane
|
|
Gene Ontology
|
GO:0005488
;
binding ( nfrA )
GO:0009279
;
cell outer membrane ( nfrA )
GO:0009597
;
detection of virus ( nfrA )
GO:0016020
;
membrane ( nfrA )
GO:0019867
;
outer membrane ( nfrA )
GO:0046718
;
entry of virus into host cell ( nfrA )
|
|
PID
|
1786780
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
NFRA_ECOLI
(
P31600
)
|
|
- Protein name
|
Bacteriophage N4 adsorption protein A precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=nfrA; OrderedLocusNames=b0568;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
nfrA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Bacteriophage N4 adsorption protein A precursor
|
|
PSI-BLAST
|
Myosin-2
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
bacteriophage N4 receptor, outer membrane subunit [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
ATP_GTP_A
|
|
MMBR References
|
J Bacteriol. 1989;171(9):4595-602.
Genetic analysis of bacteriophage N4 adsorption.
Kiino DR, Rothman-Denes LB.
(
2670887
)
|
J Bacteriol. 1993;175:7081-7085
Two overlapping genes encoding membrane proteins required for bacteriophage N4 adsorption.
Kiino, D. R., M. S. Singer, and L. B. Rothman-Denes.
|
| Sequences |
Amino acid
FASTA format
|
0001 MKENNLNRVI GWSGLLLTSL LSTSALADNI GTSAEELGLS DYRHFVIYPR LDKALKAQKN NDEATAIREF
0071 EYIHQQVPDN IPLTLYLAEA YRHFGHDDRA RLLLEDQLKR HPGDARLERS LAAIPVEVKS VTTVEELLAQ
0141 QKACDAAPTL RCRSEVGQNA LRLAQLPVAR AQLNDATFAA SPEGKTLRTD LLQRAIYLKQ WSQADTLYNE
0211 ARQQNTLSAA ERRQWFDVLL AGQLDDRILA LQSQGIFTDP QSYITYATAL AYRGEKARLQ HYLIENKPLF
0281 TTDAQEKSWL YLLSKYSANP VQALANYTVQ FADNRQYVVG ATLPVLLKEG QYDAAQKLLA TLPANEMLEE
0351 RYAVSVATRN KAEALRLARL LYQQEPANLT RLDQLTWQLM QNEQSREAAD LLLQRYPFQG DARVSQTLMA
0421 RLASLLESHP YLATPAKVAI LSKPLPLAEQ RQWQSQLPGI ADNCPAIVRL LGDMSPSYDA AAWNRLAKCY
0491 RDTLPGVALY AWLQAEQRQP SAWQHRAVAY QAYQVEDYAT ALAAWQKISL HDMSNEDLLA AANTAQAAGN
0561 GAARDRWLQQ AEKRGLGSNA LYWWLHAQRY IPGQPELALN DLTRSINIAP SANAYVARAT IYRQRHNVPA
0631 AVSDLRAALE LEPNNSNTQA ALGYALWDSG DIAQSREMLE PAHKGLPDDP ALIRQLAYVN QRLDDMPATQ
0701 HYARLVIDDI DNQALITPLT PEQNQQRFNF RRLHEEVGRR WTFSFDSSIG LRSGAMSTAN NNVGGAAPGK
0771 SYRSYGQLEA EYRIGRNMLL EGDLLSVYSR VFADTGENGV MMPVKNPMSG TGLRWKPLRD QIFFIAVEQQ
0841 LPLNGQNGAS DTMLRASASF FNGGKYSDEW HPNGSGWFAQ NLYLDAAQYI RQDIQAWTAD YRVSWHQKVA
0911 NGQTIEPYAH VQDNGYRDKG TQGAQLGGVG VRWNIWTGET HYDAWPHKVS LGVEYQHTFK AINQRNGERN
0981 NAFLTIGVHW
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cgcgtcctga caattcaacg cgaattacaa
-070 gtttcgatgc aatcactatt actcaaagca ggtttaaaca cagaacaggt tgcgcaactg gagtccgaaa
0001 atgaaggaga ataaccttaa tcgcgtcatc ggatggtctg gtttactgct gacgtcttta ttgagtacca
0071 gcgcactcgc agacaatatc ggcaccagcg cagaagagct ggggctgagc gattatcgcc attttgttat
0141 ttatccccgt ctcgataaag cgctgaaggc acagaaaaat aacgacgaag caaccgccat ccgcgaattt
0211 gaatatatac accagcaggt gccggataat attccgctga ctttatacct tgcggaagcc tatcgccatt
0281 ttggtcatga tgaccgggcg cggctgttgc ttgaggatca actgaaacgt cacccaggag atgcccgact
0351 tgagcgcagt ctggcggcta ttccggttga agtgaaaagc gttacgacag ttgaagaact gcttgcccag
0421 caaaaagcgt gcgatgctgc gccgaccctg cgttgtcgca gtgaagtcgg gcagaatgcc ctgcggctgg
0491 cacagttacc tgtcgccaga gcgcaactga acgatgcgac gtttgctgca tcgccggaag gaaaaacgct
0561 gcgaaccgat ctgctgcaac gggcaatcta cctgaaacaa tggtcccagg cagatacgct atacaatgaa
0631 gcacgccagc agaacacatt aagcgcggca gaacgccgtc agtggtttga cgtgcttctt gccgggcagc
0701 tggacgatcg gatcctggca ctgcaatcac aggggatctt caccgatcct cagtcatata ttacttacgc
0771 gaccgcgctg gcttatcgtg gcgaaaaagc acgcctccag cattatctca ttgaaaataa gccactattt
0841 accacggacg cacaagagaa aagttggctc tatctgttat ctaaatacag cgctaacccc gttcaggcgt
0911 tggcgaatta tacggtacag tttgccgaca accgccagta tgttgttggc gcgacgctac cggtgctgtt
0981 aaaagaaggt cagtacgacg cagcgcaaaa actgctcgcc accctccccg ccaatgaaat gcttgaggag
1051 cgttatgctg tcagcgtggc gacccgtaac aaggctgaag ctctgcgtct ggcacgattg ctgtatcagc
1121 aagaaccggc aaatcttacc cgcctggatc aactaacctg gcaactgatg cagaacgagc agtcacgcga
1191 agctgccgat ttattgctgc aacgctatcc tttccagggc gatgcgcgtg tcagccagac tttaatggcg
1261 cgactggcgt ctctgctgga aagtcatcct tacctggcaa cgccggcgaa ggtggcgatt ttatcgaaac
1331 ccttaccgct ggcggagcaa cgtcagtggc aaagtcagtt gccgggtatt gcagataatt gcccggcaat
1401 agttcgcttg ctgggcgata tgtcgccttc ctacgatgcc gccgcctgga accgtctggc aaagtgttat
1471 cgggacacgc tacccggtgt ggcgttgtat gcatggcttc aggccgaaca acgacaaccg agcgcctggc
1541 aacatcgtgc ggtagcctat caggcgtatc aggttgagga ctacgccacc gcactggcgg cctggcagaa
1611 aatcagtctt cacgacatga gcaatgagga tctgcttgct gctgccaata ccgcccaggc ggcaggaaat
1681 ggtgcggctc gcgatcgctg gctacaacag gcagaaaaac gtggactggg aagcaatgcc ctctactggt
1751 ggctgcatgc gcaacgttac attcctggtc agccggaact cgcactgaac gatctcacgc gctcaatcaa
1821 tattgcgcct tctgccaacg cttacgttgc gcgggcgaca atttatcgcc aacgtcataa tgtcccggcc
1891 gcggtgagtg atttgcgcgc cgcgctggaa ctggaaccga ataatagcaa cacccaggca gcgcttggtt
1961 acgccttgtg ggatagcggt gatatcgcac agtcgcggga aatgctcgaa ccggcgcata aagggcttcc
2031 ggacgatccg gcactgatcc gacaactggc ctacgtgaac cagcgtctgg atgacatgcc tgcgacgcag
2101 cactacgccc ggctggtgat tgatgacatt gataatcagg cgctgataac cccactgacc ccagaacaaa
2171 atcaacaacg cttcaatttc cgccgtttgc atgaggaggt cggtcgccgc tggacgttca gtttcgattc
2241 ttccatcggc ttgcgttccg gcgcaatgag taccgctaac aataatgtcg gcggcgcagc gccagggaaa
2311 agctatcgta gctacggaca actggaagcc gagtaccgca tcggacgcaa tatgctgctg gaaggcgacc
2381 tgctctcagt ttatagccgc gtctttgccg ataccggaga aaacggggtg atgatgccgg tgaaaaatcc
2451 gatgtccggc accggtctgc gctggaagcc gctgcgcgat cagatctttt tcatcgccgt cgaacagcag
2521 ttgccgctga acggccaaaa tggcgcatcc gataccatgc tgcgcgccag cgcctcattc tttaatggcg
2591 gcaaatacag cgacgaatgg cacccgaacg gttcaggctg gtttgcccaa aacctgtacc tcgatgcggc
2661 gcaatatatc cgccaggata ttcaggcgtg gacggcagat tatcgcgtca gctggcatca gaaggtagct
2731 aacggacaga ctattgagcc ttacgctcac gttcaggaca acggctatcg tgataaaggc actcagggcg
2801 cgcagcttgg cggagtcggg gtccgctgga atatctggac cggcgagacg cactacgacg cctggccgca
2871 caaagtcagt ctcggcgtcg agtatcaaca tacctttaag gcgattaatc aacgtaacgg agagcgcaac
2941 aacgcgtttc tcaccattgg agtgcactgg taaatgcgta agttcatttt cgtattgctg acactgcttt
3011 tggtcagccc tttttccttt gcgatgaaag gtattatctg gcaaccacaa aaccgagata gtc
|
