|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
LD3-15-1Y
(LD)
,
ppdel-2
(LD)
,
OCR44,45-2 (LD 12-1_P/O)
(D)
,
OCR44-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
quuD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
quuD
Search strains by all related name:
quuD b0551 ECK0543 JW0539 o127 o127d ybcQ
|
General information (Go to Linear View: )
|
|
Gene Name
|
quuD
|
|
Alternative name
|
b0551,ECK0543,JW0539,o127,o127d,ybcQ
|
|
Location, Length
|
573,179 - 573,562
(
+
)
;
12.35
min
;
384
(bp) ,
127
(aa)
|
|
Product
|
DLP12 prophage; predicted antitermination protein
|
|
Operon Name
|
ybcQ
|
|
Note
|
|
|
Function
|
Phage or Prophage Related
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( ybcQ )
GO:0006350
;
transcription ( ybcQ )
GO:0006355
;
regulation of transcription, DNA-dependent ( ybcQ )
GO:0030401
;
transcription antiterminator activity ( ybcQ )
GO:0031564
;
transcription antitermination ( ybcQ )
GO:0045449
;
regulation of transcription ( ybcQ )
|
|
PID
|
1786763
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
REQ1_ECOLI
(
Q47274
)
|
|
- Protein name
|
Antitermination protein Q homolog from lambdoid prophage DLP12.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybcQ; OrderedLocusNames=b0551;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybcQ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Antitermination protein Q homolog from lambdoid prophage DLP12
|
|
PSI-BLAST
|
Antitermination protein Q homolog from lambdoid prophage DLP12
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
DLP12 prophage; predicted antitermination protein [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
MYRISTYL
AMIDATION
TUBULIN_B_AUTOREG
|
| Sequences |
Amino acid
FASTA format
|
0001 MRDIQMVLER WGAWAANNHE DVTWSSIAAG FKGLITSKVK SRPQCCDDDA MIICGCMARL KKNNSDLHDL
0071 LVDYYVVGMT FMSLAGKHCC SDGYIGKRLQ KAEGIIEGML MALDIRLEMD IVVNNSN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GGAGCAGGAG TATGAAGTCA GAGATAACAA
-070 TCAACTAATA CTGTTTTGTT GATTTTTGCT TGTAATTGGC GTTCTGGTCT GATTTTTGTG GAGTAAGTTG
0001 atgcgtgata ttcagatggt tcttgagcgt tggggagcgt gggcggctaa taatcatgaa gatgtgacct
0071 ggtcgtccat tgccgccggt tttaagggat taattacttc aaaagtaaaa tctcgcccgc aatgttgtga
0141 cgatgacgcg atgatcattt gcgggtgcat ggcccgtctg aaaaagaaca acagcgattt gcacgattta
0211 ttagtagatt attatgtagt cggtatgaca ttcatgtcac tggcaggtaa gcattgctgc tctgatggtt
0281 atatcgggaa aaggttacag aaggctgagg gcataattga agggatgtta atggcattag atatccggtt
0351 agagatggat atcgttgtta ataactctaa ttaaTATGCC AATTGTTTAC TAAAAATTAT TAAAAATGGG
0421 GCGTTGAGAC GCCCCCAAAA ATAAAGGGTA ATATATAACA GAAGGTTTAT ATAGTTAGAA GCAA
|
