|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
28
(LD)
,
OCR42,43-3 (LD 28B_CRS)
(D)
,
OCR42,43-4 (LD 28B_P/O)
(D)
,
OCR43
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybbD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybbD
Search strains by all related name:
ybbD b0500 b0501 ECK0494 JW0489 o86
|
General information (Go to Linear View: )
|
|
Gene Name
|
ybbD
|
|
Alternative name
|
b0500,b0501,ECK0494,JW0489,o86
|
|
Location, Length
|
527,864 - 528,354
(
+
)
;
11.38
min
;
491
(bp) ,
162
(aa)
|
|
Product
|
|
|
Operon Name
|
rhsD-ybbC-ylbH-ybbD
|
|
Note
|
pseudogene
|
|
Function
|
|
|
Gene Ontology
|
GO:0016020
;
membrane ( ybbD )
GO:0016021
;
integral to membrane ( ybbD )
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YBBD_ECOLI
(
P33669
;
P77722
)
|
|
- Protein name
|
Hypothetical protein ybbD.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybbD; OrderedLocusNames=b0500;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybbD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ybbD
|
|
PSI-BLAST
|
Hypothetical protein ybbD
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z0653 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CK2_PHOSPHO_SITE
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AATGACCATG GGTTGACATG TCCATCAACA
-070 ACAGATTGCT CAGATAGATG TAGTGATTAT ATTAATCCAG AGCATAAAAA AACGATAAAG GCTTTACAAG
0001 atgctggcta tctcaagtaa tctatcaaag atgataatat ttatttttgc tattataatc attgttgttt
0071 tatgcgtaat tacttatctt tatttataca aagatgaatc tcttgtaagt aaacattaca taaactatat
0141 ggcaatacca gaaaatgatg gagtttttac atggctccca gatttttttc cgcacgtagc ggtggatata
0211 tcaatataca caaatgtaga agatgattat ttttttctta tttttcccta acaaatgatg atgggggtag
0281 gtttaagaaa acattgacag tgagggccag ggaacaagtg gcgaaaatcg tatcaaagaa tgatccagat
0351 acaaaaaaag tgtggtgtaa atatggtaag ataccagggc aaggggatgg tgtaaacctt ttttttgttg
0421 gtgaaattaa tgttacgcat tattttataa caaatattgg agctggattg cctgatgctt gtgcagagta
0491 aTTGCTTGAA TTAAGAGTCT ATCCCATATC GAAGTCGTCA ACTTCGTAGT GAGGAAAAGT AAAATTCCTG
0561 ACTGAGAAAA GACATGTCGG CTATTGTGTA A
|
