|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
28
(LD)
,
OCR42,43-3 (LD 28B_CRS)
(D)
,
OCR42,43-4 (LD 28B_P/O)
(D)
,
OCR43
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybbC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybbC
Search strains by all related name:
ybbC b0498 ECK0492 JW0487
|
General information (Go to Linear View: )
|
|
Gene Name
|
ybbC
|
|
Alternative name
|
b0498,ECK0492,JW0487
|
|
Location, Length
|
526,805 - 527,173
(
+
)
;
11.35
min
;
369
(bp) ,
122
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
rhsD-ybbC-ylbH-ybbD
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
1786707
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YBBC_ECOLI
(
P33668
)
|
|
- Protein name
|
Hypothetical protein ybbC precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybbC; OrderedLocusNames=b0498;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybbC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ybbC precursor
|
|
PSI-BLAST
|
Hypothetical protein ybbC precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b0498 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
|
| Sequences |
Amino acid
FASTA format
|
0001 MKYSSIFSML SFFILFACNE TAVYGSDENI IFMRYVEKLH LDKYSVKNTV KTETMAIQLA EIYVRYRYGE
0071 RIAEEEKPYL ITELPDSWVV EGAKLPYEVA GGVFIIEINK KNGCVLNFLH SK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TATTTTTATC AGAAATAGTG TCCCGGGATT
-070 GAGTTCAGTA TGCATACCGT ATCATGATTA ATTTTAGTGC TTTTATTAGT GGGGCCTATA AGGAGATTCA
0001 atgaaatata gttcaatatt ttcgatgctt tcatttttta tactatttgc ctgtaatgag acagctgttt
0071 acggttctga tgaaaacatt atttttatga ggtatgtgga aaaattacat ttagataaat actctgttaa
0141 aaatacggta aaaactgaaa caatggcgat acaattagct gaaatatatg ttaggtatcg ctatggcgaa
0211 cggattgcag aagaagaaaa accatattta attacggaac taccagatag ttgggttgtt gagggagcaa
0281 agttacctta tgaagttgcg ggtggtgtat ttattataga aattaataag aaaaatggat gtgttttgaa
0351 tttcctacat agtaaataaT GCTGGCGCTG ATGGATGCGG ATGGAAACAT TGCGTGGAGC GGGGAGTATG
0421 ATGAGTGGGG CAACCAGCTG AATGAAGAGA ACCCGCATCA CCTGCACCA
|
