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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
|
Microbiol Mol Biol Rev. 1998;62(3):814-984
Linkage map of Escherichia coli K-12, edition 10: the traditional map.
Berlyn MK.
(
9729611
)
|
|
|
Deletion
|
28
(LD)
,
OCR42,43-3 (LD 28B_CRS)
(D)
,
OCR42,43-4 (LD 28B_P/O)
(D)
,
OCR43
(D)
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|
Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
rhsD
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Related strains
|
|
Strains Search
|
Search strains by gene name:
rhsD
Search strains by all related name:
rhsD b0497 ECK0491 JW0486
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General information (Go to Linear View: )
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Gene Name
|
rhsD
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Alternative name
|
b0497,ECK0491,JW0486
|
|
Location, Length
|
522,485 - 526,765
(
+
)
;
11.26
min
;
4281
(bp) ,
1426
(aa)
|
|
Product
|
rhsD element protein
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|
Operon Name
|
rhsD-ybbC-ylbH-ybbD
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Note
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rhsD protein in rhs element
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Function
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orf; Transposon-related functions
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Gene Ontology
|
GO:0016020
;
membrane ( rhsD )
GO:0016021
;
integral to membrane ( rhsD )
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PID
|
1786706
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
RHSD_ECOLI
(
P16919
;
P77232
)
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- Protein name
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RhsD protein precursor.
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- Synonyms
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|
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- Gene name
|
Name=rhsD; OrderedLocusNames=b0497;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
|
rhsD
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
Chain , Benzoylformate Decarboxylase From Pseudomonas Putida
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|
SWISS-PROT
(database updated :
2007.02.20
)
|
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BLAST
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Protein rhsD precursor
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PSI-BLAST
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Protein rhsB precursor
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|
nr
(database updated :
2007.02.20
)
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BLAST
|
rhsD element protein [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
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MMBR References
|
J Bacteriol. 1989;171(2):636-42.
rhs gene family of Escherichia coli K-12.
Sadosky AB, Davidson A, Lin RJ, Hill CW.
(
2644231
)
|
Nucleic Acids Res. 1991;19:7177-7183
The RhsD-E subfamily of Escherichia coli K-12.
Sadosky, A. B., J. A. Gray, and C. W. Hill.
|
J Bacteriol. 1993;175:2799-2808
Rhs elements of Escherichia coli K-12: complex composites of shared and unique components that have different evolutionary histories.
Zhao, S., C. H. Sandt, G. Feulner, D. A. Vlazny, J. A. Gray, and C. W. Hill.
|
| Sequences |
Amino acid
FASTA format
|
0001 MSGKPAARQG DMTQYGGPIV QGSAGVRIGA PTGVACSVCP GGMTSGNPVN PLLGAKVLPG ETDLALPGPL
0071 PFILSRTYSS YRTKTPAPVG VFGPGWKAPS DIRLQLRDDG LILNDNGGRS IHFEPLLPGE AVYSRSESMW
0141 LVRGGKAAQP DGHTLARLWG ALPPDIRLSP HLYLATNSAQ GPWWILGWSE RVPGAEDVLP APLPPYRVLT
0211 GMADRFGRTL TYRREAAGDL AGEITGVTDG AGREFRLVLT TQAQRAEEAR TSSLSSSDSS RPLSASAFPD
0281 TLPGTEYGPD RGIRLSAVWL MHDPAYPESL PAAPLVRYTY TEAGELLAVY DRSNTQVRAF TYDAQHPGRM
0351 VAHRYAGRPE MRYRYDDTGR VVEQLNPAGL SYRYLYEQDR ITVTDSLNRR EVLHTEGGAG LKRVVKKELA
0421 DGSVTRSGYD AAGRLTAQTD AAGRRTEYGL NVVSGDITDI TTPDGRETKF YYNDGNQLTA VVSPDGLESR
0491 REYDEPGRLV SETSRSGETV RYRYDDAHSE LPATTTDATG STRQMTWSRY GQLLAFTDCS GYQTRYEYDR
0561 FGQMTAVHRE EGISLYRRYD NRGRLTSVKD AQGRETRYEY NAAGDLTAVI TPDGNRSETQ YDAWGKAVST
0631 TQGGLTRSME YDAAGRVISL TNENGSHSVF SYDALDRLVQ QGGFDGRTQR YHYDLTGKLT QSEDEGLVIL
0701 WYYDESDRIT HRTVNGEPAE QWQYDGHGWL TDISHLSEGH RVAVHYGYDD KGRLTGECQT VENPETGELL
0771 WQHETKHAYN EQGLANRVTP DSLPPVEWLT YGSGYLAGMK LGGTPLVEYT RDRLHRETVR SFGSMAGSNA
0841 AYELTSTYTP AGQLQSQHLN SLVYDRDYGW SDNGDLVRIS GPRQTREYGY SATGRLESVR TLAPDLDIRI
0911 PYATDPAGNR LPDPELHPDS TLTVWPDNRI AEDAHYVYRH DEYGRLTEKT DRIPAGVIRT DDERTHHYHY
0981 DSQHRLVFYT RIQHGEPLVE SRYLYDPLGR RMAKRVWRRE RDLTGWMSLS RKPEVTWYGW DGDRLTTVQT
1051 DTTRIQTVYE PGSFTPLIRV ETENGEREKA QRRSLAETLQ QEGSENGHGV VFPAELVRLL DRLEEEIRAD
1121 RVSSESRAWL AQCGLTVEQL ARQVEPEYTP ARKAHLYHCD HRGLPLALIS EDGNTAWSAE YDEWGNQLNE
1191 ENPHHVYQPY RLPGQQHDEE SGLYYNRHRY YDPLQGRYIT QDPMGLKGGW NLYQYPLNPL QQIDPMGLLQ
1261 TWDDARSGAC TGGVCGVLSR IIGPSKFDST ADAALDALKE TQNRSLCNDM EYSGIVCKDT NGKYFASKAE
1331 TDNLRKESYP LKRKCPTGTD RVAAYHTHGA DSHGDYVDEF FSSSDKNLVR SKDNNLEAFY LATPDGRFEA
1401 LNNKGEYIFI RNSVPGLSSV CIPYHD
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TGTGAAAAAT ATATAAATAC ATTAGCTGGT
-070 CTTGTGTGTC ATTTTATTTT TTTTTGTTGC TAACACAGGG ATATGAACAA TAACTAAAAG GGCACTTTAT
0001 atgagcggaa aaccagcggc gcgtcaggga gatatgactc agtatggcgg tcccattgtc cagggttcgg
0071 caggtgtaag aattggcgcg cccaccggcg tggcgtgctc ggtgtgtccg ggcgggatga cttcgggcaa
0141 cccggtaaat ccgctgctgg gggcgaaggt gctgcccggc gagacggacc ttgcgctgcc cggcccgctg
0211 ccgttcattc tctcccgcac ctacagcagc taccggacga agacgcctgc accggtgggc gttttcggcc
0281 ccggctggaa agcgccttct gatatccgct tacagctacg tgatgacgga ctgatactca acgacaacgg
0351 cgggcggagc attcactttg agccgctgct gccgggggag gcggtgtaca gccgcagtga gtcaatgtgg
0421 ctggtgcgcg gtggtaaggc agcacagccg gacggccata cgctggcgcg gctgtggggg gcgctgccgc
0491 cggatatccg gttaagcccg catctttacc tggcgaccaa cagcgcacag gggccgtggt ggatactggg
0561 gtggtctgag cgggtgccgg gtgctgagga cgtactgcca gcgccgctgc cgccgtaccg ggtgcttacc
0631 gggatggcgg accgcttcgg gcggacgctg acgtaccggc gtgaggccgc cggtgacctg gccggggaaa
0701 tcaccggcgt gacggacggt gccgggcggg agttccgtct ggtgctgacc acgcaggcgc agcgtgcgga
0771 agaggcccgc acctcttcgc tatcttcttc tgacagttcc cgccctctct cagcctcagc gttccccgac
0841 acactgcccg gtaccgaata cggccccgac aggggtatcc gcctttcggc ggtgtggctg atgcacgacc
0911 cggcataccc ggagagcctg cccgctgcgc cactggtgcg gtacacgtat acggaagccg gtgaactgct
0981 ggcggtatat gaccgcagca atacgcaggt gcgcgctttc acgtatgacg cgcagcaccc gggccggatg
1051 gtggcgcacc gttacgcggg aaggccggag atgcgctacc gctacgacga tacggggcgg gtggtggagc
1121 aactgaaccc ggcagggtta agctaccgct atctttatga gcaggaccgc atcaccgtca ccgacagcct
1191 gaaccggcgt gaggtgctgc atacagaagg cggggccggg ctgaaacggg tggtgaaaaa agaactggcg
1261 gacggcagcg tcacgcgcag cgggtatgac gcggcaggaa ggctcacggc gcagacggac gcggcgggac
1331 ggaggacaga gtacggtctg aatgtggtgt ccggcgatat cacggacatc accacaccgg acgggcggga
1401 gacgaaattt tactataacg acgggaacca gctgacggcg gtggtgtccc cggacgggct ggagagccgc
1471 cgggaatatg atgaaccggg caggctggta tcggagacat cgcgcagcgg ggagacagta cgctaccgct
1541 acgatgacgc gcacagtgag ttaccggcga cgacaacgga tgcgacgggc agcacccggc agatgacctg
1611 gagccgctac gggcagttgc tggcgttcac cgactgctcg ggctaccaga cccgttatga atacgaccgc
1681 ttcggccaga tgacggcggt ccaccgcgag gaaggcatca gcctttaccg ccgctatgac aaccgtggcc
1751 ggttaacctc ggtgaaagac gcacagggcc gtgaaacgcg gtatgaatac aacgccgcag gcgacctgac
1821 tgccgttatc accccggacg gcaaccggag cgagacacag tacgatgcgt ggggaaaggc ggtcagcacc
1891 acgcagggcg ggctgacgcg cagtatggag tacgatgctg ccggacgtgt catcagcctg accaacgaga
1961 acggcagcca cagcgtcttc agttacgatg cgctggaccg gctggtacag cagggcggct ttgacgggcg
2031 gacgcaacgt tatcattatg acctgaccgg aaaactcaca cagagtgagg atgagggact tgtcatcctc
2101 tggtactacg atgaatcgga ccgtatcact caccgcacgg tgaacggcga accggcagag cagtggcagt
2171 atgatggcca cggctggctg acagacatca gccacctgag cgaaggccac cgtgttgccg tccactatgg
2241 ctatgacgat aaaggccgcc tgaccggcga atgccagacg gtggagaacc cggagacggg ggaactgctg
2311 tggcagcatg agacgaaaca cgcatacaac gagcaggggc tggcaaaccg cgtcacgccg gacagcctgc
2381 cgccggtgga gtggctgacg tatggcagcg gttacctggc gggaatgaag ctgggcggga cgccgctggt
2451 cgagtatacg cgggacaggc tgcaccgtga gacggtgcgc agcttcggca gcatggcagg cagtaatgcc
2521 gcatacgaac tgaccagcac atacaccccc gcaggccagt tacagagcca gcacctgaac agcctggtat
2591 atgaccgtga ctacgggtgg agtgacaacg gcgacctggt gcgcatcagc ggcccgcgac agacgcggga
2661 atacggctac agcgccacgg gcaggctgga gagtgtgcgc accctcgcac cagacctgga catccgcatc
2731 ccgtatgcca cggacccggc gggcaaccgg ctgccggacc cggagctgca cccggacagt acactcacag
2801 tgtggccgga taaccgcatc gcggaggatg cgcactatgt ctaccgccac gatgaatacg gcaggctgac
2871 ggagaagacg gaccgcatcc cggcgggtgt gatacggacg gacgacgagc ggacccacca ctaccactac
2941 gacagccagc accgcctggt gttctacacg cggatacagc atggcgagcc actggtcgag agccgctacc
3011 tctacgaccc gctgggacgg cgaatggcaa aacgggtctg gcggcgggag cgtgacctga cggggtggat
3081 gtcgctgtcg cgtaaaccgg aggtgacgtg gtatggctgg gacggagaca ggctgacgac ggtgcagact
3151 gacaccacac gtatccagac ggtatacgag ccgggaagct tcacgccgct catccgggtc gagacagaga
3221 acggcgagcg ggaaaaagcg cagcggcgca gcctggcaga gacgctccag caggaaggga gtgagaacgg
3291 ccacggcgtg gtgttcccgg ctgaactggt gcggctgctg gacaggctgg aggaagaaat ccgggcagac
3361 cgcgtgagca gtgaaagccg ggcgtggctt gcgcagtgcg ggctgacggt ggagcaactg gccagacagg
3431 tggagccgga atacacaccg gcgcgaaaag ctcatcttta tcactgcgac caccggggac tgccgctggc
3501 gcttatcagc gaagacggca atacggcgtg gagcgcggaa tatgatgaat ggggcaacca gcttaatgag
3571 gagaacccgc atcatgtgta tcagccgtac cgtctgccag ggcagcagca tgatgaggaa tcagggctgt
3641 actataaccg tcaccggtac tacgatccgt tgcaggggcg gtatattact caggacccga tggggttgaa
3711 agggggatgg aatttatatc agtatccttt aaatccacta caacaaattg accctatggg attattgcag
3781 acttgggatg atgccagatc tggagcatgt acggggggag tttgtggtgt tctttcacgt ataataggac
3851 caagtaaatt tgatagtact gcagatgctg cgttagatgc tttgaaagaa acgcagaata gatctctatg
3921 taatgatatg gaatactctg gtattgtctg taaagatact aatggaaaat attttgcatc taaggcagaa
3991 actgataatt taagaaagga gtcatatcct ctgaaaagaa aatgtcccac aggtacagat agagttgctg
4061 cttatcatac tcacggtgca gatagtcatg gcgattatgt tgatgaattt ttttcaagta gcgataaaaa
4131 tcttgtaaga agtaaagata ataatcttga agcattttat ctcgcaacac ctgatggacg atttgaggcg
4201 cttaataata aaggagaata tatttttatc agaaatagtg tcccgggatt gagttcagta tgcataccgt
4271 atcatgatta aTTTTAGTGC TTTTATTAGT GGGGCCTATA AGGAGATTCA ATGAAATATA GTTCAATATT
4341 TTCGATGCTT TCATTTTTTA TACTATTTGC CTGTAATGAG A
|
