|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
28
(LD)
,
OCR42
(D)
,
OCR42,43-3 (LD 28B_CRS)
(D)
,
OCR42,43-4 (LD 28B_P/O)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybaK
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybaK
Search strains by all related name:
ybaK b0481 ECK0475 f159 JW0470 proX
|
General information (Go to Linear View: )
|
|
Gene Name
|
ybaK
|
|
Alternative name
|
b0481,ECK0475,f159,JW0470,proX
|
|
Location, Length
|
505,827 - 506,306
(
-
)
;
10.90
min
;
480
(bp) ,
159
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
ybaK
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( proX )
GO:0005488
;
binding ( proX )
GO:0005515
;
protein binding ( proX )
GO:0005515
;
protein binding ( ybaK )
GO:0006350
;
transcription ( ybaK )
GO:0006355
;
regulation of transcription, DNA-dependent ( ybaK )
GO:0006810
;
transport ( proX )
GO:0006865
;
amino acid transport ( proX )
GO:0042597
;
periplasmic space ( proX )
|
|
PID
|
1786688
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YBAK_ECOLI
(
P37175
;
P77281
)
|
|
- Protein name
|
Protein ybaK.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybaK; OrderedLocusNames=b0481, SF0426, S0433;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybaK
(
homologous genes of other bacterias
)
proX
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Cysteinyl-Trna(Pro) Deacylase Protein From H. Influenzae (Hi1434)
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein ybaK
|
|
PSI-BLAST
|
Prolyl-tRNA synthetase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b0481 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MTPAVKLLEK NKISFQIHTY EHDPAETNFG DEVVKKLGLN PDQVYKTLLV AVNGDMKHLA VAVTPVAGQL
0071 DLKKVAKALG AKKVEMADPM VAQRSTGYLV GGISPLGQKK RLPTIIDAPA QEFATIYVSG GKRGLDIELA
0141 AGDLAKILDA KFADIARRD
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 caccatcctg ccaatactct taggcaagat
-070 gactcttttt tttggaccgc catcaggcgt atgcttgctt cgtttttttg tttaaggcag gaaaattacc
0001 atgacacccg cagttaaatt actcgaaaaa aacaagattt cgtttcaaat ccatacctac gagcacgatc
0071 cggctgaaac caattttggc gatgaagtcg tcaaaaaatt aggtttgaat ccggatcagg tctacaaaac
0141 gctgctggtg gcagtgaacg gtgatatgaa acaccttgcc gtggccgtta cgccggtcgc aggtcaactg
0211 gatcttaaaa aagtagcaaa agcgctgggt gccaagaaag ttgagatggc cgatccgatg gtcgcgcagc
0281 gttcgacggg atacctggtt ggggggatta gcccactggg gcagaaaaaa cgtctgccaa cgattatcga
0351 cgcccccgca caagaatttg ccactattta tgtttccggc ggcaagcgcg gactggatat cgaactggcg
0421 gcaggcgatc tggcaaagat cctcgatgcc aaatttgctg atatcgcccg ccgcgattaa gcattgtgcc
0491 ggatgcaaac atccggcact ttcggattac tgccagctca cctcaccttt cggttcataa acactcacat
0561 ccagcggcga gcttttctgg
|
