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PEC Original Annotations
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Essentiality
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Class
|
essential
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|
References (PMID)
|
J Bacteriol. 2005;187(13):4552-61.
Characterization of six lipoproteins in the sigmaE regulon.
Onufryk C, Crouch ML, Fang FC, Gross CA.
(
15968066
)
|
|
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Deletion
|
OCL52,53-1
(D)
|
|
Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
bamD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
bamD
Search strains by all related name:
bamD b2595 ecfD ECK2593 JW2577 yfiO
|
General information (Go to Linear View: )
|
|
Gene Name
|
bamD
|
|
Alternative name
|
b2595,ecfD,ECK2593,JW2577,yfiO
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|
Location, Length
|
2,734,168 - 2,734,905
(
+
)
;
58.93
min
;
738
(bp) ,
245
(aa)
|
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Product
|
lipoprotein required for OM biogenesis, in BamABCDE complex
|
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Operon Name
|
bamD
|
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Note
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Function
|
|
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Gene Ontology
|
GO:0005515
;
protein binding ( yfiO )
GO:0009279
;
cell outer membrane ( yfiO )
GO:0016020
;
membrane ( yfiO )
GO:0019867
;
outer membrane ( yfiO )
|
|
PID
|
1788947
|
EC number
(KEGG Pathway)
|
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Homology Analysis
|
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BLAST
|
|
Bacteria
|
|
GTOP
|
yfiO
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
UPF0169 lipoprotein yfiO precursor
|
|
PSI-BLAST
|
Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z3889 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
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PROSITE
|
|
PROSITE
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MTRMKYLVAA ATLSLFLAGC SGSKEEVPDN PPNEIYATAQ QKLQDGNWRQ AITQLEALDN RYPFGPYSQQ
0071 VQLDLIYAYY KNADLPLAQA AIDRFIRLNP THPNIDYVMY MRGLTNMALD DSALQGFFGV DRSDRDPQHA
0141 RAAFSDFSKL VRGYPNSQYT TDATKRLVFL KDRLAKYEYS VAEYYTERGA WVAVVNRVEG MLRDYPDTQA
0211 TRDALPLMEN AYRQMQMNAQ AEKVAKIIAA NSSNT
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGGCTTTGCC GTTTAATATA GTGTGCTATT
-070 GTAGCTGGTC TTAACCGGGA GCAGGAACAG AGAATCTCCC GTATTACATT TTGAGGAAAG TCAAAACGTC
0001 atgacgcgca tgaaatatct ggtggcagcc gccacactaa gcctgttttt ggcgggttgc tcggggtcaa
0071 aggaagaagt acctgataat ccgccaaatg aaatttacgc gactgcacaa caaaagctgc aggacggtaa
0141 ctggagacag gcaataacgc aactggaagc gttagataat cgctatccgt ttggtccgta ttcgcagcag
0211 gtgcagctgg atctcatcta cgcctactat aaaaacgccg atttgccgtt agcacaggct gccatcgatc
0281 gttttattcg ccttaacccg acccatccga atatcgatta tgtcatgtac atgcgtggcc tgaccaatat
0351 ggcgctggat gacagtgcgc tgcaagggtt ctttggcgtc gatcgtagcg atcgcgatcc tcaacatgca
0421 cgagctgcgt ttagtgactt ttccaaactg gtgcgcggct atccgaacag tcagtacacc accgatgcca
0491 ccaaacgtct ggtattcctg aaagatcgtc tggcgaaata tgaatactcc gtggccgagt actatacaga
0561 acgtggcgca tgggttgccg tcgttaaccg cgtagaaggc atgttgcgcg actacccgga tacccaggct
0631 acgcgtgatg cgctgccgct gatggaaaat gcataccgtc agatgcagat gaatgcgcaa gctgaaaaag
0701 tagcgaaaat catcgccgca aacagcagca atacataaCA GAAACCTGAA ACACAAAACG GCAGCCCTTG
0771 AGCTGCCGTT TTTTTATTCT GTCAGTTGTG AAACTGAAGC GATTTAGTCG CTATCGATCT CATCAAAT
|
