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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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Deletion
|
1
(LD)
,
OCR20,24-1 (LD 1-1_CRS)
(D)
,
OCR20,24-2 (LD 1-1_P/O)
(D)
,
OCR24
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
hsdS
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Related strains
|
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Strains Search
|
Search strains by gene name:
hsdS
Search strains by all related name:
hsdS b4348 ECK4338 hsp hss JW4311
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General information (Go to Linear View: )
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Gene Name
|
hsdS
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Alternative name
|
b4348,ECK4338,hsp,hss,JW4311
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Location, Length
|
4,578,091 - 4,579,485
(
-
)
;
98.67
min
;
1395
(bp) ,
464
(aa)
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Product
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specificity determinant for hsdM and hsdR
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Operon Name
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hsdRMS
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Note
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GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006306 - DNA methylation
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Function
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enzyme; DNA - replication, repair,restriction/modification
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Gene Ontology
|
GO:0003677
;
DNA binding ( hsdS )
GO:0005515
;
protein binding ( hsdS )
GO:0006304
;
DNA modification ( hsdS )
GO:0009307
;
DNA restriction-modification system ( hsdS )
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PID
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1790807
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
|
T1SK_ECOLI
(
P05719
)
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- Protein name
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Type I restriction enzyme EcoKI specificity protein
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- Synonyms
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S protein, S.EcoKI
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- Gene name
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Name=hsdS; Synonyms=hss; OrderedLocusNames=b4348;
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MMBR References
|
J Mol Biol. 1983;166(1):1-19.
Sequence diversity among related genes for recognition of specific targets in DNA molecules.
Gough JA, Murray NE.
(
6304321
)
|
J Mol Biol. 1987;198(2):159-70.
Organization and sequence of the hsd genes of Escherichia coli K-12.
Loenen WA, Daniel AS, Braymer HD, Murray NE.
(
3323532
)
|
EMBO J. 1982;1(5):535-9.
Structural homologies among type I restriction-modification systems.
Murray NE, Gough JA, Suri B, Bickle TA.
(
6329689
)
|
Mol Gen Genet. 1980;180(1):35-46.
The hsd (host specificity) genes of E. coli K 12.
Sain B, Murray NE.
(
6255295
)
|
Am Sci. 1982;70(1):61-9.
Restriction and modification of DNA by a complex protein.
Yuan R, Hamilton DL.
(
6282152
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MSAGKLPEGW VIAPVSTVTT LIRGVTYKKE QAINYLKDDY LPLIRANNIQ NGKFDTTDLV FVPKNLVKES
0071 QKISPEDIVI AMSSGSKSVV GKSAHQHLPF ECSFGAFCGV LRPEKLIFSG FIAHFTKSSL YRNKISSLSA
0141 GANINNIKPA SFDLINIPIP PLAEQKIIAE KLDTLLAQVD STKARFEQIP QILKRFRQAV LGGAVNGKLT
0211 EKWRNFEPQH SVFKKLNFES ILTELRNGLS SKPNESGVGH PILRISSVRA GHVDQNDIRF LECSESELNR
0281 HKLQDGDLLF TRYNGSLEFV GVCGLLKKLQ HQNLLYPDKL IRARLTKDAL PEYIEIFFSS PSARNAMMNC
0351 VKTTSGQKGI SGKDIKSQVV LLPPVKEQAE IVRRVEQLFA YADTIEKQVN NALARVNNLT QSILAKAFRG
0421 ELTAQWRAEN PDLISGENSA AALLEKIKAE RAASGGKKAS RKKS
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Nucleotide
FASTA format
View sequence out neighbor 100bp
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-100 cgctgtctga actggatgcg ctgatgcgtg
-070 aactgggggc gagcgatgag gccgatttgc agcgtcagtt gctggaagaa gcgtttggtg gggtgaagga
0001 atgagtgcgg ggaaattgcc ggaggggtgg gttatcgccc cagtatctac ggtcacaact ctaatccgag
0071 gagtaacgta taaaaaagag caggcaataa attatctaaa agatgattat ttgcctctta tccgtgcgaa
0141 caatattcag aatggcaagt ttgatactac ggacttggtt tttgttccta aaaatcttgt taaagaaagt
0211 caaaaaatat ctcctgaaga tattgttatt gcaatgtcat cagggagcaa atccgtagtt ggtaaatccg
0281 cacatcagca tctaccattt gaatgtagtt tcggcgcatt ttgcggtgta ttacgtcctg aaaaacttat
0351 attttctggt tttattgctc atttcacaaa atcttctctt tatcgaaaca aaatttcatc actttctgct
0421 ggtgcaaata ttaataatat taagccggca agctttgatt tgataaatat accaatccca ccacttgccg
0491 aacaaaaaat catcgctgaa aaactcgata cgctgctggc gcaggtagac agcaccaaag cacgttttga
0561 gcaaatccca caaatcctga aacgttttcg tcaagcggta ttggggggcg cagttaatgg aaaattgaca
0631 gaaaaatggc gtaattttga gccgcaacat tctgtattta agaagttaaa ttttgaatct atcttaactg
0701 aattacgtaa tggtctttca tcaaagccaa atgaaagtgg tgttggtcat ccaatactac gcattagttc
0771 tgtacgtgct ggccatgtag atcaaaacga tattcggttt ctagaatgtt cagaaagtga actaaaccgc
0841 cacaaattac aagatggaga tcttttattt actcgctata acggaagttt agaatttgtt ggtgtttgtg
0911 ggttattgaa aaaattacaa catcaaaatt tgctatatcc tgataaactt attcgagctc gattaaccaa
0981 agatgcttta ccagaatata tcgaaatatt tttttcatcc ccctcagcac gaaatgcaat gatgaactgc
1051 gtgaaaacaa cttctggtca aaaaggtatt tcaggaaaag atatcaaatc ccaagttgtt ttattacctc
1121 cagtaaaaga acaagccgaa atcgttcgcc gcgtcgagca actcttcgcc tacgccgaca ccatagaaaa
1191 acaggtcaac aacgccttag cccgcgtcaa caacctgacg caatccatcc tggcaaaagc gttccgtggt
1261 gaacttaccg cccagtggcg ggccgaaaac ccggatttga tcagcggaga aaacagcgcc gccgcgttgc
1331 tggaaaaaat caaagctgaa cgcgcagcta gcgggggtaa aaaagcctca cgtaaaaaat cctgaacatt
1401 attttctggc gcacctttcc ggtgcgcttt ttattatttc acgccaatca taacccacat aaatatattt
1471 aaatcattcc agaaattgcc cattt
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