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PEC Original Annotations
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Essentiality
|
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Class
|
non-essential
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References (PMID)
|
|
|
Deletion
|
OCR19
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
bdcR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
bdcR
Search strains by all related name:
bdcR b4250 b4251 ECK4244 JW4208 o54 o84 yjgJ
|
General information (Go to Linear View: )
|
|
Gene Name
|
bdcR
|
|
Alternative name
|
b4250,b4251,ECK4244,JW4208,o54,o84,yjgJ
|
|
Location, Length
|
4,472,147 - 4,472,740
(
+
)
;
96.39
min
;
594
(bp) ,
197
(aa)
|
|
Product
|
transcriptional repressor for divergent bdcA
|
|
Operon Name
|
yjgJ
|
|
Note
|
|
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Function
|
regulator; Not classified
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( yjgJ )
GO:0003700
;
transcription factor activity ( yjgJ )
GO:0006350
;
transcription ( yjgJ )
GO:0006355
;
regulation of transcription, DNA-dependent ( yjgJ )
GO:0045449
;
regulation of transcription ( yjgJ )
|
|
PID
|
87082397
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
P76808
(
P76808
)
|
|
- Protein name
|
Hypothetical protein.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b4250;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yjgJ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Putative Tetr Transcriptional Regulator From Rhodococcus Sp. Rha1
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putative HTH-type transcriptional regulator yjgJ
|
|
PSI-BLAST
|
Putative HTH-type transcriptional regulator yjgJ
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted transcriptional regulator [Escherichia coli W3110]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MVTKKQSRVP GRPRRFAPEQ AISAAKVLFH QKGFDAVSVA EVTDYLGINP PSLYAAFGSK AGLFSRVLNE
0071 YVGTEAIPLA DILRDDRPVG ECLVEVLKEA ARRYSQNGGC AGCMVLEGIH SHDPQARDIA VQYYHAAETT
0141 IYDYIARRHP QRAQCVTDFM STVMSGLSAK AREGHSIEQL CATAAMAGEA IKTILEE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GAGAACTGTC TTACCTGTAA AAGCGCCCAT
-070 AAGGACTCCT TGATTTATTA TGTAACATGC ATTACAAAAC TGTTTTAACT TTCTGTCAAC AGGTTTTGTA
0001 atggtcacta aaaaacaatc tcgcgttcca ggtcgtccca gacgtttcgc tcctgagcag gcaatctctg
0071 cggcaaaagt gctttttcac caaaaaggtt tcgatgctgt cagtgttgct gaagttactg attatcttgg
0141 tattaacccc ccgagcctct acgcggcttt tggcagtaaa gctgggttat ttagccgtgt actcaatgaa
0211 tacgtcggta cggaagctat tccgcttgcc gatattcttc gtgatgatcg tccggtaggc gagtgcctgg
0281 ttgaggtatt aaaagaagcg gcgcgcagat atagccaaaa cggcggctgc gctggctgta tggttcttga
0351 aggtattcat agtcatgatc cacaagcgcg tgatattgcc gttcaatatt atcacgccgc agaaacgacc
0421 atttatgact acatcgccag gcggcatcca caacgcgcac aatgtgtgac tgattttatg agtaccgtga
0491 tgtctgggct ttctgcgaag gcacgagagg ggcactctat agaacaactc tgtgcaacag ctgcaatggc
0561 gggggaagcg ataaaaacta ttcttgagga gtgaTGCGGG CCTTGACCCG AAAGGCGGGA AAGCGCCTGC
0631 CGATAAGTTG TGATAAGACA ATAATTCACG CGTTAAGGCT AGCGGAATTG ATTATCTTTT CGTA
|
