MG1655
W3110
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Gene Report : ribE
PEC Original Annotations
Essentiality
     Class essential
     References (PMID)
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
     Deletion OCR39 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  ribE
Related strains
     Strains Search Search strains by gene name:  ribE   Search strains by all related name:  ribE b0415 ECK0409 JW0405 ribH ybaF

General information  (Go to Linear View:)
 Gene Name ribE  
 Alternative name b0415,ECK0409,JW0405,ribH,ybaF  
 Location, Length 433,871 - 434,341 (  +  ) ;   9.35 min ; 471 (bp) ,   156 (aa) Go to Linear View
 Product riboflavin synthase beta chain  
 Operon Name nrdR-ribDE-nusB-thiL-pgpA  
 Note riboflavin synthase, beta chain  
 Function enzyme; Biosynthesis of cofactors, carriers: Riboflavin  
 Gene Ontology GO:0004746 ; riboflavin synthase activity ( ribE )
GO:0004746 ; riboflavin synthase activity ( ribH )
GO:0009231 ; riboflavin biosynthetic process ( ribE )
GO:0009231 ; riboflavin biosynthetic process ( ribH )
GO:0009349 ; riboflavin synthase complex ( ribH )
GO:0016740 ; transferase activity ( ribE )
GO:0016740 ; transferase activity ( ribH )
 PID 1786617  
 EC number
  (KEGG Pathway)
 
2.5.1.9  
SWISS-PROT  ( Show details [ 5 more] )
  botton Entry name(Acc.no) RISA_ECOLI ( P29015 )
    -  Protein name Riboflavin synthase alpha chain  
    -  Synonyms EC 2.5.1.9  
    -  Gene name Name=ribE; Synonyms=ribC; OrderedLocusNames=b1662, SF1690, S1822;  

 Linear View (Whole Mode)
View Location
   425.0  –  450.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP ribE (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (Lumazine synthase) (Riboflavin synthase beta chain)  
         PSI-BLAST 6,7-dimethyl-8-ribityllumazine synthase
    nr     (database updated : 2007.02.20 )
         BLAST riboflavin synthase, beta chain [Shigella flexneri 5 str. 8401]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL     

Other Cross-Reference
    EcoCyc ribE 

Sequences
Amino acid
FASTA format
0001 MNIIEANVAT PDARVAITIA RFNNFINDSL LEGAIDALKR IGQVKDENIT VVWVPGAYEL PLAAGALAKT 
0071 GKYDAVIALG TVIRGGTAHF EYVAGGASNG LAHVAQDSEI PVAFGVLTTE SIEQAIERAG TKAGNKGAEA 
0141 ALTALEMINV LKAIKA

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             GTGGGTGCAT GATCTCCCGG CTCGAAAGGG 
-070 AAGCAGCGCA CGAAATATTA TGCTAAAATC CGCCCCCCTG CGGGGCCATA CTCGAACCCG AAGGAAGAAA 
0001 atgaacatta ttgaagctaa cgttgctacc ccggacgctc gcgtcgccat caccatcgcg cgtttcaaca 
0071 actttatcaa tgacagcctg ctggaaggtg caattgacgc actgaaacgt atcggtcagg taaaagatga 
0141 aaacattacc gttgtttggg tgcctggtgc ctatgagctg ccgctggcgg cgggtgcact ggctaaaacc 
0211 ggtaaatacg acgcggtgat tgcgctgggt acggttattc gtggtggcac tgcccacttt gaatatgtcg 
0281 ctggtggtgc aagcaacggc ctggcgcatg ttgcccagga cagcgaaatt ccggttgctt ttggggttct 
0351 gaccactgaa agcattgaac aagcgatcga acgtgctggc accaaagctg gcaacaaagg tgcagaagct 
0421 gcactgaccg cgcttgaaat gattaatgta ttgaaagcca tcaaggcctg aAATTAGTAA GGGGAAATCC 
0491 GTGAAACCTG CTGCTCGTCG CCGCGCTCGT GAGTGTGCCG TCCAGGCGCT CTACTCCTGG CAGTTGTCCC 
0561 AGAACGACAT C