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PEC Original Annotations
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Essentiality
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Class
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essential
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References (PMID)
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Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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Deletion
|
OCR16,17-3 (BK2-17 / AK1-17)
(D)
,
OCR16-5
(D)
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Related gene (W3110 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
psd
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Related strains
|
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Strains Search
|
Search strains by gene name:
psd
Search strains by all related name:
psd b4160 ECK4156 JW4121
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General information (Go to Linear View: )
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Gene Name
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psd
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Alternative name
|
b4160,ECK4156,JW4121
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Location, Length
|
4,387,415 - 4,388,383
(
-
)
;
94.56
min
;
969
(bp) ,
322
(aa)
|
|
Product
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phosphatidylserine decarboxylase
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Operon Name
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psd-yjeP
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Note
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phosphatidylserine decarboxylase; phospholipid synthesis; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process
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Function
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enzyme; Macromolecule synthesis, modification: Phospholipids
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Gene Ontology
|
GO:0004609
;
phosphatidylserine decarboxylase activity ( psd )
GO:0005886
;
plasma membrane ( psd )
GO:0008654
;
phospholipid biosynthetic process ( psd )
GO:0016020
;
membrane ( psd )
GO:0016829
;
lyase activity ( psd )
GO:0016831
;
carboxy-lyase activity ( psd )
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PID
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1790604
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EC number
(KEGG Pathway)
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4.1.1.65
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Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
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EcoGene
|
psd
(
EG10775
)
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Number of removed
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0 aa cleaved
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
|
PSD_ECOLI
(
P10740
)
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- Protein name
|
Phosphatidylserine decarboxylase proenzyme
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- Synonyms
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EC 4.1.1.65
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- Gene name
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OrderedLocusNames=b4160, c5247, z5766, ECs5139, SF4318, S4582;
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MMBR References
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J Biol Chem. 1988;263:11516-11522
Structural characterization of Escherichia coli phosphatidylserine decarboxylase.
Li, Q. X., and W. Dowhan.
|
J Bacteriol. 1993;175:7711-7714
The pss and psd genes are required for motility and chemotaxis in Escherichia coli.
Shi, W., M. Bogdanov, W. Dowhan, and D. R. Zusman.
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| Sequences |
Amino acid
FASTA format
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0001 MLNSFKLSLQ YILPKLWLTR LAGWGASKRA GWLTKLVIDL FVKYYKVDMK EAQKPDTASY RTFNEFFVRP
0071 LRDEVRPIDT DPNVLVMPAD GVISQLGKIE EDKILQAKGH NYSLEALLAG NYLMADLFRN GTFVTTYLSP
0141 RDYHRVHMPC NGILREMIYV PGDLFSVNHL TAQNVPNLFA RNERVICLFD TEFGPMAQIL VGATIVGSIE
0211 TVWAGTITPP REGIIKRWTW PAGENDGSVA LLKGQEMGRF KLGSTVINLF APGKVNLVEQ LESLSVTKIG
0281 QPLAVSTETF VTPDAEPAPL PAEEIEAEHD ASPLVDDKKD QV
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ctgacaatta agctaaccgt cgttagaatc
-070 gtcccctttt tttcaggatc cggcatgtag gccggatcag gaacgacaaa acaatggcct ggaggctacc
0001 ttgttaaatt catttaaact ttcgctacag tacattctgc cgaaactatg gcttactcgc ctggcgggtt
0071 ggggcgcaag caagcgggca ggatggctga caaaactggt tatcgatctg ttcgttaaat actacaaggt
0141 cgacatgaaa gaggcgcaaa agccggacac cgccagctac cgcaccttta acgaattctt tgtccgtccg
0211 ctgcgtgacg aagtacgccc aatcgatacc gatccgaatg tactggtcat gcctgccgat ggcgttatca
0281 gccagttggg taaaatcgaa gaagataaaa tcctgcaagc caaaggccac aactacagcc tcgaagccct
0351 gctggcaggc aactatctga tggcggacct gttccgcaac ggtacgtttg tgaccactta cctctccccg
0421 cgtgactacc accgcgtaca catgccgtgc aacggtattc tgcgtgagat gatctacgtg ccgggcgatc
0491 tcttctccgt taaccatctc acggctcaga acgtgccgaa tctgtttgcc cgtaacgaac gcgtgatttg
0561 ccttttcgat accgaatttg gcccaatggc gcagattctg gtcggagcga cgattgttgg cagcattgag
0631 acggtctggg cgggcaccat tacgccgccg cgcgaaggta tcatcaagcg ctggacctgg cctgccgggg
0701 aaaacgacgg ttctgtggca ctgctgaaag gccaggaaat gggtcgcttt aaactcggtt ccaccgttat
0771 caacctgttt gcaccgggta aagtgaatct ggttgagcaa ctggaaagcc tgtctgtcac gaaaattggc
0841 cagccgctgg cagtatctac cgaaaccttt gttacgccag acgctgaacc tgccccgctt cctgctgaag
0911 agatcgaagc agaacacgac gccagcccat tggttgacga caaaaaagac caggtctaat ccatcaaagg
0981 aaacgctgac gtgcgcctga ttatcacttt tctgatggcc tggtgcctca gttggggggc gtacgccgcg
1051 acggcccccg atagcaaac
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