|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
4
(LD)
,
OCR13,15-3 (LD 4E_CRS)
(D)
,
OCR13,15-4 (LD 4E_P/O)
(D)
,
OCR14
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
basR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
basR
Search strains by all related name:
basR b4113 ECK4106 f222 JW4074 pmrA
|
General information (Go to Linear View: )
|
|
Gene Name
|
basR
|
|
Alternative name
|
b4113,ECK4106,f222,JW4074,pmrA
|
|
Location, Length
|
4,331,305 - 4,331,973
(
-
)
;
93.35
min
;
669
(bp) ,
222
(aa)
|
|
Product
|
DNA-binding response regulator in two-component regulatory system with BasS
|
|
Operon Name
|
basRS
|
|
Note
|
transcriptional regulatory protein, member of 2-component regulatory system; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016563 - transcription activator activity; GO_process: GO:0006350 - transcription
|
|
Function
|
regulator; RNA synthesis, modification, DNA transcription
|
|
Gene Ontology
|
GO:0000156
;
two-component response regulator activity ( basR )
GO:0000160
;
two-component signal transduction system (phosphorelay) ( basR )
GO:0003677
;
DNA binding ( basR )
GO:0005737
;
cytoplasm ( basR )
GO:0006350
;
transcription ( basR )
GO:0006355
;
regulation of transcription, DNA-dependent ( basR )
GO:0046677
;
response to antibiotic ( basR )
|
|
PID
|
1790552
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
BASR_ECOLI
(
P30843
)
|
|
- Protein name
|
Transcriptional regulatory protein basR/pmrA.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=basR; Synonyms=pmrA; OrderedLocusNames=b4113;
|
|
MMBR References
|
J. Biochem. (Tokyo) 1993;114:350-357
Novel members of the two-component signal transduction genes in Escherichia coli.
Nagasawa, S., K. Ishige, and T. Mizuno.
|
J Bacteriol. 1993;175:4154-4164
Spontaneous pmrA mutants of Salmonella typhimurium LT2 define a new two-component regulatory system with a possible role in virulence.
Roland, K. L., L. E. Martin, C. R. Esther, and J. K. Spitznagel.
|
| Sequences |
Amino acid
FASTA format
|
0001 MKILIVEDDT LLLQGLILAA QTEGYACDSV TTARMAEQSL EAGHYSLVVL DLGLPDEDGL HFLARIRQKK
0071 YTLPVLILTA RDTLTDKIAG LDVGADDYLV KPFALEELHA RIRALLRRHN NQGESELIVG NLTLNMGRRQ
0141 VWMGGEELIL TPKEYALLSR LMLKAGSPVH REILYNDIYN WDNEPSTNTL EVHIHNLRDK VGKARIRTVR
0211 GFGYMLVANE EN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aagacaattt attctccacg ctattgggat
-070 taactggcgt tgagacgaag tattaccagg ctgcggatga tattctgcaa acttgcagga gagtgagtga
0001 atgaaaattc tgattgttga agacgatacg ctgttattgc agggactgat tctggcggcg caaaccgaag
0071 gctacgcgtg cgatagcgtg acaaccgcgc ggatggcgga acaaagcctt gaggcaggtc attacagcct
0141 ggtggtactg gatttagggt tacccgacga agatggactg cattttctcg cccgtatccg gcagaaaaaa
0211 tataccctgc cggtactgat cctcaccgct cgcgatacgc tgaccgacaa aatcgccggg ctggatgtcg
0281 gtgccgacga ctatctggtg aagccttttg cgctggaaga gttacatgcc cgtatccgcg ccctgctacg
0351 acgccataat aatcagggcg aaagtgagct gattgttggc aatctgacgc tgaacatggg tcgccgtcag
0421 gtatggatgg gcggtgaaga gttgattctg acgcccaaag aatatgctct gctgtcacgg ttaatgctca
0491 aagcaggcag tccggtgcat cgggaaattc tctacaacga catctataac tgggacaatg aaccctcgac
0561 caacaccctg gaagtgcata tccacaatct gcgcgacaaa gtgggcaaag cccgtatccg caccgtgcgc
0631 ggctttggct atatgctggt cgcgaatgag gaaaactaat tgaatctgat gcattttctg cgccgaccaa
0701 tatcgctgcg ccaacggctg atattgacca tcggggccat tttgttggtg tttgagctga tcagcgtct
|
