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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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Deletion
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OCR12
(D)
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Related gene (W3110 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
dinF
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Related strains
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Strains Search
|
Search strains by gene name:
dinF
Search strains by all related name:
dinF b4044 ECK4036 JW4004
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General information (Go to Linear View: )
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Gene Name
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dinF
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Alternative name
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b4044,ECK4036,JW4004
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Location, Length
|
4,255,765 - 4,257,144
(
+
)
;
91.73
min
;
1380
(bp) ,
459
(aa)
|
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Product
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oxidative stress resistance protein; predicted MATE family efflux pump; UV and mitomycin C inducible protein
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Operon Name
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lexA-dinF
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Note
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DNA-damage-inducible protein F; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006281 - DNA repair; GO_process: GO:0009314 - response to radiation; GO_process: GO:0009432 - SOS response
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Function
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factor; DNA - replication, repair,restriction/modification
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Gene Ontology
|
GO:0005886
;
plasma membrane ( dinF )
GO:0006855
;
multidrug transport ( dinF )
GO:0015238
;
drug transporter activity ( dinF )
GO:0015297
;
antiporter activity ( dinF )
GO:0016020
;
membrane ( dinF )
GO:0016021
;
integral to membrane ( dinF )
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PID
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1790477
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
[
2
more]
)
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Entry name(Acc.no)
|
DINF_ECOLI
(
P28303
)
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- Protein name
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DNA-damage-inducible protein F.
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- Synonyms
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- Gene name
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Name=dinF; OrderedLocusNames=b4044;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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dinF
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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DNA-damage-inducible protein F
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PSI-BLAST
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Multidrug resistance protein norM
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nr
(database updated :
2007.02.20
)
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BLAST
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DNA-damage-inducible SOS response protein [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
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MMBR References
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Proc Natl Acad Sci U S A. 1980;77:2819-2823
DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli.
Kenyon, C. J., and G. C. Walker.
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J Bacteriol. 1983;153(3):1368-78.
Isolation and characterization of Tn5 insertion mutations in the lexA gene of Escherichia coli.
Krueger JH, Elledge SJ, Walker GC.
(
6298183
)
|
Nucleic Acids Res. 1981;9:529-543
Organization of the lexA gene of Escherichia coli and nucleotide sequence of the regulatory region.
Miki, T., Y. Ebina, F. Kishi, and A. Nakazawa.
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| Sequences |
Amino acid
FASTA format
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0001 MPPGVAVCFS SLFIRLVCMA FLTSSDKALW HLALPMIFSN ITVPLLGLVD TAVIGHLDSP VYLGGVAVGA
0071 TATSFLFMLL LFLRMSTTGL TAQAYGAKNP QALARTLVQP LLLALGAGAL IALLRTPIID LALHIVGGSE
0141 AVLEQARRFL EIRWLSAPAS LANLVLLGWL LGVQYARAPV ILLVVGNILN IVLDVWLVMG LHMNVQGAAL
0211 ATVIAEYATL LIGLLMVRKI LKLRGISGEM LKTAWRGNFR RLLALNRDIM LRSLLLQLCF GAITVLGARL
0281 GSDIIAVNAV LMTLLTFTAY ALDGFAYAVE AHSGQAYGAR DGSQLLDVWR AACRQSGIVA LLFSVVYLLA
0351 GEHIIALLTS LTQIQQLADR YLIWQVILPV VGVWCYLLDG MFIGATRATE MRNSMAVAAA GFALTLLTLP
0421 WLGNHALWLA LTVFLALRGL SLAAIWRRHW RNGTWFAAT
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AATTGTCGTT GACCTTCGTC AGCAGAGCTT
-070 CACCATTGAA GGGCTGGCGG TTGGGGTTAT TCGCAACGGC GACTGGCTGT AACATATCTC TGAGACCGCG
0001 atgccgcctg gcgtcgcggt ttgtttttca tctctcttca tcaggcttgt ctgcatggca ttcctcactt
0071 catctgataa agcactctgg catctcgcct tacccatgat tttctccaat atcaccgttc cgttgctggg
0141 actggtcgat acggcggtaa ttggtcatct tgatagcccg gtttatttgg gcggcgtggc ggttggtgca
0211 acggcgacca gctttctctt tatgctgttg ctgtttttac gcatgagcac caccgggctg actgcgcagg
0281 cttatggtgc caaaaatcct caggcattag cccgtacgct ggtgcaaccg ttgctgttgg cgttgggggc
0351 tggggcgtta attgcgctgc tgcgtacgcc gattatcgat ctggcgctgc atattgttgg cggtagtgag
0421 gcagtcctgg aacaggcgcg gcgctttctt gaaatccgct ggttaagcgc accggcgtcg ctggcgaatc
0491 tggtattact cggttggtta ctcggcgtgc aatatgcccg tgcgccagta attttgttag tggtcggcaa
0561 tatcctcaac attgtgctgg atgtctggct ggtgatgggg ctgcatatga acgtgcaggg cgcggcgctg
0631 gcgacggtta ttgcggaata tgcaacattg ctgattggtc tgctaatggt gcgtaaaatc ctcaaactac
0701 gcggaatttc cggcgaaatg ctgaaaactg cctggcgagg aaacttccgt cgcttgctgg cgcttaaccg
0771 cgatatcatg ctgcgttcgc tgttgttgca actctgtttc ggcgcgatca ccgtacttgg cgcgcgactg
0841 gggagtgaca ttatcgctgt taacgcggtt ctgatgacgc tactcacctt taccgcctat gcgctggatg
0911 gttttgccta cgcggttgaa gcgcactccg gtcaggcata cggtgcgcgc gacggtagcc agttgctgga
0981 tgtctggcgg gcagcgtgcc gccagtcggg gatcgtagcg ttactgtttt cggtggttta tttgctggct
1051 ggggaacaca tcattgcgtt actgacgtcg ttaacccaga ttcagcagct ggctgaccgc tatcttatct
1121 ggcaggtgat tttgccggtg gttggcgtct ggtgttatct gctggacggc atgtttatag gcgcaacgcg
1191 tgccaccgaa atgcgtaaca gtatggcggt ggccgccgca ggttttgcgc tgacgctcct tacgctgccg
1261 tggctgggta atcatgcttt gtggctggca ttaaccgtct ttctggcgtt gcgcgggctt tctctggcgg
1331 ctatctggcg gcgtcactgg cgcaatggta cctggtttgc cgcaacgtga CGGTTAAAAA TTCTGAATAA
1401 ATAATCCTAA GCCAAATTGC TGACTACACT TAATCTCACG TTCAGAAGAA AAGTGAACGT ACTCTCATTC
1471 ACAACCTAAC
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