MG1655
W3110
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Gene Report : araJ
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
J Bacteriol. 1991;173(24):7765-71.
Mapping, sequence, and apparent lack of function of araJ, a gene of the Escherichia coli arabinose regulon.
Reeder T, Schleif R. ( 1744033 )
     Deletion OCR39 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  araJ
Related strains
     Strains Search Search strains by gene name:  araJ   Search strains by all related name:  araJ b0396 ECK0390 JW0386

General information  (Go to Linear View:)
 Gene Name araJ  
 Alternative name b0396,ECK0390,JW0386  
 Location, Length 410,521 - 411,705 (  -  ) ;   8.85 min ; 1185 (bp) ,   394 (aa) Go to Linear View
 Product arabinose-inducible predicted transporter, MFS family  
 Operon Name araJ  
 Note involved in either transport or processing of arabinose polymers; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process  
 Function transport; Degradation of small molecules: Carbon compounds  
 Gene Ontology GO:0005215; transporter activity ( araJ )
GO:0005886; plasma membrane ( araJ )
GO:0006810; transport ( araJ )
GO:0016020; membrane ( araJ )
GO:0016021; integral to membrane ( araJ )
 PID 1786595  
 EC number
  (KEGG Pathway)
 
 
SWISS-PROT  ( Show details [ 2 more] )
  botton Entry name(Acc.no) ARAJ_ECOLI ( P23910 )
    -  Protein name Protein araJ precursor.  
    -  Synonyms  
    -  Gene name Name=araJ; OrderedLocusNames=b0396;  

 Linear View (Whole Mode)
View Location
   400.0  –  425.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP araJ (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, Structure Of The Multidrug Transporter Emrd From Escherichia Coli  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Protein araJ  
         PSI-BLAST High-affinity glucose transporter SNF3
    nr     (database updated : 2007.02.20 )
         BLAST protein AraJ precursor [Escherichia coli]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE PKC_PHOSPHO_SITE    MYRISTYL     

Other Cross-Reference
    COG COG2814G 
    EcoCyc araJ 

MMBR References
J Mol Biol. 1990;215(4):497-510.
Characterization of the Escherichia coli araFGH and araJ promoters.
Hendrickson W, Stoner C, Schleif R. ( 2231717 )
J Bacteriol. 1991;173(24):7765-71.
Mapping, sequence, and apparent lack of function of araJ, a gene of the Escherichia coli arabinose regulon.
Reeder T, Schleif R. ( 1744033 )

Sequences
Amino acid
FASTA format
0001 MKKVILSLAL GTFGLGMAEF GIMGVLTELA HNVGISIPAA GHMISYYALG VVVGAPIIAL FSSRYSLKHI 
0071 LLFLVALCVI GNAMFTLSSS YLMLAIGRLV SGFPHGAFFG VGAIVLSKII KPGKVTAAVA GMVSGMTVAN 
0141 LLGIPLGTYL SQEFSWRYTF LLIAVFNIAV MASVYFWVPD IRDEAKGNLR EQFHFLRSPA PWLIFAATMF 
0211 GNAGVFAWFS YVKPYMMFIS GFSETAMTFI MMLVGLGMVL GNMLSGRISG RYSPLRIAAV TDFIIVLALL 
0281 MLFFCGGMKT TSLIFAFICC AGLFALSAPL QILLLQNAKG GELLGAAGGQ IAFNLGSAVG AYCGGMMLTL 
0351 GLAYNYVALP AALLSFAAMS SLLLYGRYKR QQAADTPVLA KPLG

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             aggggcgaat tatctcttgg ccttgctggt 
-070 cgttatcctg caagctatca ctttattggc tacggtgatt ggtagccgtt ctggtggttg tgatggtggt 
0001 atgaaaaaag tcattttatc tttggctctg ggcacgtttg gtttggggat ggccgaattt ggcattatgg 
0071 gcgtgctcac ggagctggcg cataacgtag gaatttcgat tcctgccgcc gggcatatga tctcgtatta 
0141 tgcactgggg gtggtggtcg gtgcgccaat catcgcactc ttttccagcc gctactcact caaacatatc 
0211 ttgttgtttc tggtggcgtt gtgcgtcatt ggcaacgcca tgttcacgct ctcttcgtct tacctgatgc 
0281 tcgccattgg tcggctggta tccggctttc cgcatggcgc attttttggc gtcggagcga tcgtgttatc 
0351 aaaaattatc aaacccggaa aagtcaccgc cgccgtggcg gggatggttt ccgggatgac agtcgccaat 
0421 ttgctgggca ttccgctggg aacgtattta agtcaggaat ttagctggcg ttacaccttt ttattgatcg 
0491 ctgtttttaa tattgcggtg atggcatcgg tctatttttg ggtgccagat attcgcgacg aggcgaaagg 
0561 aaatctgcgc gaacaatttc actttttgcg cagcccggcc ccgtggttaa ttttcgccgc cacgatgttt 
0631 ggcaacgcag gtgtgtttgc ctggttcagc tacgtaaagc catacatgat gtttatttcc ggtttttcgg 
0701 aaacggcgat gacctttatt atgatgttag ttgggctagg gatggtgctg ggaaatatgc taagtggcag 
0771 gatttcagga cgttattcac cactgcgcat tgcagcagtg actgacttta taattgtact ggcactgctg 
0841 atgctctttt tctgcggcgg catgaaaaca acgtcgctta tttttgcttt tatttgttgc gcgggattat 
0911 ttgccctttc agcaccgcta caaatattgt tactacaaaa cgccaaaggc ggagagttat taggtgccgc 
0981 aggtgggcaa atagcgttta acctcggtag cgccgtcggc gcatattgcg gaggtatgat gctgacgctg 
1051 gggctggcat ataattacgt ggcgctgcct gccgccctgc tttcgtttgc tgcgatgtcg tcgttgctgc 
1121 tgtatggtcg ctataagcgc cagcaagcgg cggatactcc ggtgctggcg aaaccactgg ggtaggttat 
1191 agtctcggtg ctcattactt attgccggat gcggcgtgaa cgccttatcc gccctacgcg gttctggcac 
1261 attttgcagg cctgataaga cgcgg