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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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OCR12
(D)
,
OCR12-9
(D)
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Related gene (W3110 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
xylE
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Related strains
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Strains Search
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Search strains by gene name:
xylE
Search strains by all related name:
xylE b4031 ECK4023 JW3991
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General information (Go to Linear View: )
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Gene Name
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xylE
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Alternative name
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b4031,ECK4023,JW3991
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Location, Length
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4,238,802 - 4,240,277
(
-
)
;
91.36
min
;
1476
(bp) ,
491
(aa)
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Product
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D-xylose transporter
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Operon Name
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xylE
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Note
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xylose-proton symport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0015753 - D-xylose transport
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Function
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transport; Transport of small molecules: Carbohydrates, organic acids, alcohols
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Gene Ontology
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GO:0005215
;
transporter activity ( xylE )
GO:0005351
;
sugar:hydrogen ion symporter activity ( xylE )
GO:0005886
;
plasma membrane ( xylE )
GO:0006810
;
transport ( xylE )
GO:0008643
;
carbohydrate transport ( xylE )
GO:0015293
;
symporter activity ( xylE )
GO:0016020
;
membrane ( xylE )
GO:0016021
;
integral to membrane ( xylE )
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PID
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1790463
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
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XYLE_ECOLI
(
P09098
)
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- Protein name
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D-xylose-proton symporter
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- Synonyms
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D-xylose transporter
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- Gene name
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Name=xylE; OrderedLocusNames=b4031, z5629, ECs5014;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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xylE
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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D-xylose-proton symporter (D-xylose transporter)
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PSI-BLAST
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High-affinity glucose transporter SNF3
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nr
(database updated :
2007.02.20
)
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BLAST
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xylose-proton symport [Escherichia coli O157:H7 EDL933]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
PROKAR_LIPOPROTEIN
SUGAR_TRANSPORT_1
SUGAR_TRANSPORT_2
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MMBR References
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Nucleic Acids Res. 1988;16:4097-4109
3' end of the malEFG operon in E. coli: localization of the transcription termination site.
Francoz, E., and E. Dassa.
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Agric. Biol. Chem. 1985;49:2597-2603.
An Escherichia coli mutant having altered D-xylose uptake activity and cloning of a gene for D-xylose uptake.
Kurose, N., K. Murata, and A. Kimura.
|
Receptors Channels. 1995;3(2):117-28.
Molecular genetics of a receptor protein for D-xylose, encoded by the gene xylF, in Escherichia coli.
Sumiya M, Davis EO, Packman LC, McDonald TP, Henderson PJ.
(
8581399
)
|
J Biol Chem. 1984;259:1520-1525
Location of a structural gene for xylose-H+ symport at 91 min. on the linkage map of Escherichia coli.
Davis, E. O., M. C. Jones-Mortimer, and P. J. F. Henderson.
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J Biol Chem. 1987;262:13928-13932
The cloning and DNA sequence of the gene xylE for xylose-proton symport in Escherichia coli K12.
Davis, E. O., and P. J. F. Henderson.
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| Sequences |
Amino acid
FASTA format
|
0001 MNTQYNSSYI FSITLVATLG GLLFGYDTAV ISGTVESLNT VFVAPQNLSE SAANSLLGFC VASALIGCII
0071 GGALGGYCSN RFGRRDSLKI AAVLFFISGV GSAWPELGFT SINPDNTVPV YLAGYVPEFV IYRIIGGIGV
0141 GLASMLSPMY IAELAPAHIR GKLVSFNQFA IIFGQLLVYC VNYFIARSGD ASWLNTDGWR YMFASECIPA
0211 LLFLMLLYTV PESPRWLMSR GKQEQAEGIL RKIMGNTLAT QAVQEIKHSL DHGRKTGGRL LMFGVGVIVI
0281 GVMLSIFQQF VGINVVLYYA PEVFKTLGAS TDIALLQTII VGVINLTFTV LAIMTVDKFG RKPLQIIGAL
0351 GMAIGMFSLG TAFYTQAPGI VALLSMLFYV AAFAMSWGPV CWVLLSEIFP NAIRGKALAI AVAAQWLANY
0421 FVSWTFPMMD KNSWLVAHFH NGFSYWIYGC MGVLAALFMW KFVPETKGKT LEELEALWEP ETKKTQQTAT
0491 L
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tacgtaaacg cattgtaaaa aatgataatt
-070 gccttaactg cctgacaatt ccaacatcaa tgcactgata aaagatcaga atggtctaag gcaggtctga
0001 atgaataccc agtataattc cagttatata ttttcgatta ccttagtcgc tacattaggt ggtttattat
0071 ttggctacga caccgccgtt atttccggta ctgttgagtc actcaatacc gtctttgttg ctccacaaaa
0141 cttaagtgaa tccgctgcca actccctgtt agggttttgc gtggccagcg ctctgattgg ttgcatcatc
0211 ggcggtgccc tcggtggtta ttgcagtaac cgcttcggtc gtcgtgattc acttaagatt gctgctgtcc
0281 tgttttttat ttctggtgta ggttctgcct ggccagaact tggttttacc tctataaacc cggacaacac
0351 tgtgcctgtt tatctggcag gttatgtccc ggaatttgtt atttatcgca ttattggcgg tattggcgtt
0421 ggtttagcct caatgctctc gccaatgtat attgcggaac tggctccagc tcatattcgc gggaaactgg
0491 tctcttttaa ccagtttgcg attattttcg ggcaactttt agtttactgc gtaaactatt ttattgcccg
0561 ttccggtgat gccagctggc tgaatactga cggctggcgt tatatgtttg cctcggaatg tatccctgca
0631 ctgctgttct taatgctgct gtataccgtg ccagaaagtc ctcgctggct gatgtcgcgc ggcaagcaag
0701 aacaggcgga aggtatcctg cgcaaaatta tgggcaacac gcttgcaact caggcagtac aggaaattaa
0771 acactccctg gatcatggcc gcaaaaccgg tggtcgtctg ctgatgtttg gcgtgggcgt gattgtaatc
0841 ggcgtaatgc tctccatctt ccagcaattt gtcggcatca atgtggtgct gtactacgcg ccggaagtgt
0911 tcaaaacgct gggggccagc acggatatcg cgctgttgca gaccattatt gtcggagtta tcaacctcac
0981 cttcaccgtt ctggcaatta tgacggtgga taaatttggt cgtaagccac tgcaaattat cggcgcactc
1051 ggaatggcaa tcggtatgtt tagcctcggt accgcgtttt acactcaggc accgggtatt gtggcgctac
1121 tgtcgatgct gttctatgtt gccgcctttg ccatgtcctg gggtccggta tgctgggtac tgctgtcgga
1191 aatcttcccg aatgctattc gtggtaaagc gctggcaatc gcggtggcgg cccagtggct ggcgaactac
1261 ttcgtctcct ggaccttccc gatgatggac aaaaactcct ggctggtggc ccatttccac aacggtttct
1331 cctactggat ttacggttgt atgggcgttc tggcagcact gtttatgtgg aaatttgtcc cggaaaccaa
1401 aggtaaaacc cttgaggagc tggaagcgct ctgggaaccg gaaacgaaga aaacacaaca aactgctacg
1471 ctgtaatctt cctgtccagc acgccgcgcc atttcggcgt gctgactttt tactcccgct tcagccgttt
1541 cgaattacac agccacaggg tgatcaccag taacag
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