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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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|
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Deletion
|
OCR12
(D)
,
OCR12-8
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
yjbH
|
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Related strains
|
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Strains Search
|
Search strains by gene name:
yjbH
Search strains by all related name:
yjbH b4029 ECK4021 JW3989 o698
|
General information (Go to Linear View: )
|
|
Gene Name
|
yjbH
|
|
Alternative name
|
b4029,ECK4021,JW3989,o698
|
|
Location, Length
|
4,235,657 - 4,237,753
(
+
)
;
91.29
min
;
2097
(bp) ,
698
(aa)
|
|
Product
|
putative porin
|
|
Operon Name
|
yjbEFGH
|
|
Note
|
|
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Function
|
|
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Gene Ontology
|
GO:0005886
;
plasma membrane ( yjbH )
GO:0016020
;
membrane ( yjbH )
|
|
PID
|
1790461
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YJBH_ECOLI
(
P32689
)
|
|
- Protein name
|
Hypothetical lipoprotein yjbH precursor.
|
|
- Synonyms
|
|
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- Gene name
|
Name=yjbH; OrderedLocusNames=b4029;
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Homology Analysis
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BLAST
|
|
Bacteria
|
|
GTOP
|
yjbH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical lipoprotein yjbH precursor
|
|
PSI-BLAST
|
Hypothetical lipoprotein yjbH precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted porin [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
PROKAR_LIPOPROTEIN
|
| Sequences |
Amino acid
FASTA format
|
0001 MKKRHLLSLL ALGISTACYG ETYPAPIGPS QSDFGGVGLL QTPTARMARE GELSLNYRDN DQYRYYSASV
0071 QLFPWLETTL RYTDVRTRQY SSVEAFSGDQ TYKDKAFDLK LRLWEESYWL PQVAVGARDI GGTGLFDAEY
0141 LVASKAWGPF DFTLGLGWGY LGTSGNVKNP LCSASDKYCY RDNSYKQAGS IDGSQMFHGP ASLFGGVEYQ
0211 TPWQPLRLKL EYEGNNYQQD FAGKLEQKSK FNVGAIYRVT DWADVNLSYE RGNTFMFGVT LRTNFNDLRP
0281 SYNDNARPQY QPQPQDAILQ HSVVANQLTL LKYNAGLADP QIQAKGDTLY VTGEQVKYRD SREGIIRANR
0351 IVMNDLPDGI KTIRITENRL NMPQVTTETD VASLKNHLAG EPLGHETTLA QKRVEPVVPQ STEQGWYIDK
0421 SRFDFHIDPV LNQSVGGPEN FYMYQLGVMG TADLWLTDHL LTTGSLFANL ANNYDKFNYT NPPQDSHLPR
0491 VRTHVREYVQ NDVYVNNLQA NYFQHLGNGF YGQVYGGYLE TMFGGAGAEV LYRPLDSNWA FGLDANYVKQ
0561 RDWRSAKDMM KFTDYSVKTG HLTAYWTPSF AQDVLVKASV GQYLAGDKGG TLEIAKRFDS GVVVGGYATI
0631 TNVSKEEYGE GDFTKGVYVS VPLDLFSSGP TRSRAAIGWT PLTRDGGQQL GRKFQLYDMT SDRSVNFR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCATTATTTA TGTTGGCCTC GCGGACTCCG
-070 TCTGGAGTGA GACGCCTGAT GCCCTTAACG CCGACATTCT TCAGACTCTG ACGCAGCGGA TACCTCAATA
0001 atgaaaaaaa gacatctgct tagcttactg gcgctgggca ttagcacagc ttgctacggc gaaacatatc
0071 ctgcgcccat tggtccgtcg cagtcggatt tcggtggcgt aggattatta caaacgccca ccgcgcgtat
0141 ggcacgggaa ggggagttga gtctgaacta tcgcgataac gatcagtacc gttattactc agcttcagtg
0211 caactcttcc cgtggctgga aacaacgctg cgctacaccg acgtgcgcac ccggcagtac agcagcgtcg
0281 aagcgttctc tggcgatcaa acgtataaag ataaagcctt cgatctcaaa ctgcgtttgt gggaagagag
0351 ttactggctg ccgcaagtgg cggttggtgc gcgggatatc ggcggtacgg ggctgtttga tgcggaatat
0421 cttgttgcca gcaaagcctg ggggccgttc gattttacgc tcggcctggg ctgggggtat ttgggcacca
0491 gcggtaatgt gaaaaatccg ctctgttcag ccagtgataa atattgctat cgcgataaca gctacaaaca
0561 ggcgggatct atcgacggta gccagatgtt ccacggtcct gcctcactgt ttggcggcgt ggaataccag
0631 acgccctggc aaccgctgcg cctgaaactg gagtatgaag gcaataatta tcagcaggat tttgccggga
0701 agctggagca aaaaagtaag tttaacgtcg gtgcgattta tcgcgttacc gattgggccg acgttaacct
0771 tagctatgaa cgtggcaaca cctttatgtt tggcgttacg ttgcgcacca actttaacga tctgcgcccg
0841 tcttacaacg ataacgcccg cccgcaatat caaccgcagc cgcaggatgc cattttgcag cattcggtgg
0911 tggcgaatca gttaacgctg ttgaaataca atgccggact tgccgatcca cagatccagg cgaaaggcga
0981 tacgctgtat gttaccggcg agcaggtgaa atatcgtgat tcgcgcgaag ggatcatccg tgcgaatcgg
1051 atcgtgatga acgatctgcc ggatgggatc aaaacgatcc gcattacgga aaatcgcctt aacatgccgc
1121 aggtgacgac ggaaaccgat gtcgccagcc tgaaaaatca tctcgccgga gagccgttgg gccacgaaac
1191 gacgctggcg caaaaacgcg tcgagccagt ggttccgcag tccaccgagc agggctggta tatcgacaaa
1261 tcacgctttg atttccatat cgatccggtg ctgaaccagt cggtcggtgg cccggaaaac ttttacatgt
1331 atcagctggg cgtgatggga acggcagatt tgtggctgac ggaccatctg ctgaccaccg gcagcctgtt
1401 tgcaaatctt gccaacaact acgacaagtt taactacact aatcctccgc aggactcgca cttaccgcgc
1471 gtgcgtaccc atgtgcgcga gtatgtgcag aacgatgtct atgtgaataa cctgcaagcc aactacttcc
1541 agcatctggg caacggcttc tacggtcagg tctacggtgg ttatctcgaa accatgtttg gcggtgcggg
1611 ggcagaagtg ttgtatcgcc cgctggacag caactgggcg tttggtctgg atgccaacta cgttaaacag
1681 cgcgactggc gtagtgcaaa agatatgatg aaattcaccg actacagcgt gaaaaccgga catctgaccg
1751 cctactggac gccatctttc gctcaggatg tgttagttaa agccagcgtc gggcagtatc tggcagggga
1821 taaaggcggc acgctggaga tcgccaaacg ctttgatagc ggcgtggtgg tgggtggcta tgccacgatc
1891 actaatgttt cgaaagagga gtacggcgaa ggggacttca ccaaaggcgt gtatgtctcg gtaccgttgg
1961 atctcttctc gtctggcccg acacgcagcc gtgcggcgat tggctggacg ccgctgacgc gtgacggtgg
2031 tcagcaactt gggcgtaagt tccagttgta tgacatgacc agcgaccgta gcgtcaattt ccgctaaGTC
2101 ATGGGAAAGG TGCCAGTTTT CGCACTCACT GGCACCTTCA TTCTTAATGG CCTGTCGAGC CATCAGGAAC
2171 GCAGTTCACT CCCGGTTTGC GATCTGG
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