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PEC Original Annotations
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Essentiality
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Class
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essential
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References (PMID)
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Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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Deletion
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OCR10,11-11 (AK1-16 / BK2-16)
(D)
,
OCR10,11-16 (BK5-16 / AK7-16)
(D)
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Related gene (W3110 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
rplJ
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Related strains
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Strains Search
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Search strains by gene name:
rplJ
Search strains by all related name:
rplJ b3985 ECK3976 JW3948
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General information (Go to Linear View: )
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Gene Name
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rplJ
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Alternative name
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b3985,ECK3976,JW3948
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Location, Length
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4,178,019 - 4,178,516
(
+
)
;
90.05
min
;
498
(bp) ,
165
(aa)
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Product
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50S ribosomal subunit protein L10
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Operon Name
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rplKAJL-rpoBC
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Note
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GO_component: GO:0005737 - cytoplasm; GO_function: GO:0003735 - structural constituent of ribosome; GO_process: GO:0006412 - translation
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Function
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structural component; Ribosomal proteins - synthesis, modification
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Gene Ontology
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GO:0003723
;
RNA binding ( rplJ )
GO:0003735
;
structural constituent of ribosome ( rplJ )
GO:0005515
;
protein binding ( rplJ )
GO:0005622
;
intracellular ( rplJ )
GO:0005840
;
ribosome ( rplJ )
GO:0006412
;
translation ( rplJ )
GO:0006417
;
regulation of translation ( rplJ )
GO:0030529
;
ribonucleoprotein complex ( rplJ )
GO:0042254
;
ribosome biogenesis and assembly ( rplJ )
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PID
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1790417
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EC number
(KEGG Pathway)
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Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
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EcoGene
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rplJ
(
EG10871
)
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Number of removed
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1 aa cleaved
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
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RL10_ECOLI
(
P02408
)
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- Protein name
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50S ribosomal protein L10
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- Synonyms
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L8
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- Gene name
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OrderedLocusNames=b3985, c4941, z5558, ECs4908, SF4058, S3677;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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rplJ
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P21
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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50S ribosomal protein L10 (50S ribosomal protein L8)
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PSI-BLAST
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50S ribosomal protein L10
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nr
(database updated :
2007.02.20
)
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BLAST
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50S ribosomal protein L10 [Escherichia coli O157:H7 EDL933]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
RIBOSOMAL_L10
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MMBR References
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J Mol Biol. 1987;194(4):609-20.
Transcription products from the rplKAJL-rpoBC gene cluster.
Downing WL, Dennis PP.
(
2443706
)
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Cell. 1980;19(4):837-44.
Post-transcriptional regulatory mutants in a ribosomal protein-RNA polymerase operon of E. coli.
Fiil NP, Friesen JD, Downing WL, Dennis PP.
(
6991124
)
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Proc Natl Acad Sci U S A. 1980;77:2124-2128
Bacteriophage vehicle for the direct cloning of Escherichia coli promoter DNA sequences: feedback regulation of the rplJL-rpoBC operon.
Holowachuk, E. W., J. D. Friesen, and N. Fiil.
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J Bacteriol. 1982;152(3):1022-32.
Insertions of transposon Tn5 into ribosomal protein PNA polymerase operons.
Hui I, Maltman K, Little R, Hastrup S, Johnsen M, Fiil N, Dennis P.
(
6292159
)
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Proc Natl Acad Sci U S A. 1980;77:3331-3335
Attenuation and processing of RNA from the rplJL-rpoBC transcription unit of Escherichia coli.
Barry, G., C. Squires, and C. L. Squires.
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Proc Natl Acad Sci U S A. 1979;76:4922-4926
Control features within the rplJL-rpoBC transcription unit of Escherichia coli.
Barry, G., C. L. Squires, and C. Squires.
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J Bacteriol. 1979;140(2):479-89.
Lambda transducing bacteriophage carrying deletions of the argCBH-rpoBC region of the Escherichia coli chromosome.
Linn T, Goman M, Scaife J.
(
159290
)
|
J Bacteriol. 1981;147(1):25-35.
Transcriptional and post-transcriptional control of ribosomal protein and ribonucleic acid polymerase genes.
Little R, Fiil NP, Dennis PP.
(
7016843
)
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Mol Gen Genet. 1981;184(3):548-50.
Internal promoters of the rpoBC operon of Escherichia coli.
Ma JC, Newman AJ, Hayward RS.
(
6278264
)
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Mol Gen Genet. 1980;177(3):527-33.
Cloning of DNA of the rpoBC operon from the chromosome of Escherichia coli K12.
Newman A, Hayward RS.
(
6246404
)
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Proc Natl Acad Sci U S A. 1979;76:1697-1701
Nucleotide sequence of the ribosomal protein gene cluster adjacent to the gene for RNA polymerase subunit beta in Escherichia coli.
Post, L. E., G. D. Strycharz, M. Nomura, H. Lewis, and P. P. Dennis.
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J Bacteriol. 1984;158(1):279-85.
Relative activities of the transcriptional regulatory sites in the rplKAJLrpoBC gene cluster of Escherichia coli.
Ralling G, Linn T.
(
6325390
)
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J Mol Biol. 1991;218(1):23-31.
In vivo analysis of overlapping transcription units in the rplKAJLrpoBC ribosomal protein-RNA polymerase gene cluster of Escherichia coli.
Steward KL, Linn T.
(
1825852
)
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Gene. 1979;6(4):331-65.
Escherichia coli RNA polymerase binding and initiation of transcription on fragments of lambda rifd 18 DNA containing promoters for lambda genes and for rrnB, tufB, rplC,A, rplJ,L, and rpoB,C genes.
Taylor WE, Burgess RR.
(
159206
)
|
Mol Gen Genet. 1981;183(2):277-82.
In vivo synthesis of a polycistronic messenger RNA for the ribosomal proteins L11, L1, L10 and L7/12 in Escherichia coli.
Bruckner R, Matzura H.
(
7035827
)
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J Mol Biol. 1987;198(3):371-81.
Feedback regulation of the rplJL-rpoBC ribosomal protein operon of Escherichia coli requires a region of mRNA secondary structure.
Climie SC, Friesen JD.
(
2448482
)
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J Bacteriol. 1980;144(3):904-16.
Characterization of promoter-cloning plasmids: analysis of operon structure in the rif region of Escherichia coli and isolation of an enhanced internal promoter mutant.
An G, Friesen JD.
(
7002914
)
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| Sequences |
Amino acid
FASTA format
|
0001 MALNLQDKQA IVAEVSEVAK GALSAVVADS RGVTVDKMTE LRKAGREAGV YMRVVRNTLL RRAVEGTPFE
0071 CLKDAFVGPT LIAYSMEHPG AAARLFKEFA KANAKFEVKA AAFEGELIPA SQIDRLATLP TYEEAIARLM
0141 ATMKEASAGK LVRTLAAVRD AKEAA
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Nucleotide
FASTA format
View sequence out neighbor 100bp
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-100 TGGCTTGTTT CTGCTCACCG TAATTAAGAC
-070 GCTCTCTCCG TTTGGAGGAG TGAAGTGAGT TCCAGAGATT TTCTCTGGCA AACATCCAGG AGCAAAGCTA
0001 atggctttaa atcttcaaga caaacaagcg attgttgctg aagtcagcga agtagccaaa ggcgcgctgt
0071 ctgcagtagt tgcggattcc cgtggcgtaa ctgtagataa aatgactgaa ctgcgtaaag caggtcgcga
0141 agctggcgta tacatgcgtg ttgttcgtaa caccctgctg cgccgtgctg ttgaaggtac tccgttcgag
0211 tgcctgaaag acgcgtttgt tggtccgacc ctgattgcat actctatgga acacccgggc gctgctgctc
0281 gtctgttcaa agagttcgcg aaagcgaatg caaaatttga ggtcaaagcc gctgcctttg aaggtgagct
0351 gatcccggcg tctcagatcg accgcctggc aactctgccg acctacgaag aagcaattgc acgcctgatg
0421 gcaaccatga aagaagcttc ggctggcaaa ctggttcgta ctctggctgc tgtacgcgat gcgaaagaag
0491 ctgcttaaTC GCAGTTATCT TTTTAACGCA TTCGCTTACG TATAAACTTA TTCTGATATT CAGGAACAAT
0561 TTAAATGTCT ATCACTAAAG ATCAAATCAT TGAAGCAG
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