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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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OCR07
(D)
,
DE(rhaD-tpiA)269
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Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
rhaT
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Related strains
|
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Strains Search
|
Search strains by gene name:
rhaT
Search strains by all related name:
rhaT b3907 ECK3900 f344 JW3878
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General information (Go to Linear View: )
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Gene Name
|
rhaT
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Alternative name
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b3907,ECK3900,f344,JW3878
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Location, Length
|
4,097,514 - 4,098,548
(
-
)
;
88.31
min
;
1035
(bp) ,
344
(aa)
|
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Product
|
L-rhamnose:proton symporter
|
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Operon Name
|
rhaT
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Note
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rhamnose transport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process
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Function
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transport; Transport of small molecules: Carbohydrates, organic acids, alcohols
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Gene Ontology
|
GO:0005351
;
sugar:hydrogen ion symporter activity ( rhaT )
GO:0005886
;
plasma membrane ( rhaT )
GO:0006810
;
transport ( rhaT )
GO:0008643
;
carbohydrate transport ( rhaT )
GO:0008645
;
hexose transport ( rhaT )
GO:0009276
;
1-2nm peptidoglycan-based cell wall ( rhaT )
GO:0015153
;
rhamnose transmembrane transporter activity ( rhaT )
GO:0015293
;
symporter activity ( rhaT )
GO:0015762
;
rhamnose transport ( rhaT )
GO:0016020
;
membrane ( rhaT )
GO:0016021
;
integral to membrane ( rhaT )
|
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PID
|
1790341
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EC number
(KEGG Pathway)
|
|
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SWISS-PROT
(
Show details
[
2
more]
)
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Entry name(Acc.no)
|
RHAT_ECOLI
(
P27125
)
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- Protein name
|
L-rhamnose-proton symporter
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- Synonyms
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L-rhamnose-H(+) transport protein
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- Gene name
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Name=rhaT; OrderedLocusNames=b3907;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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rhaT
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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L-rhamnose-proton symporter
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PSI-BLAST
|
L-rhamnose-proton symporter
|
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nr
(database updated :
2007.02.20
)
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BLAST
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L-rhamnose:proton symporter [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
|
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
MYRISTYL
AMIDATION
PROKAR_LIPOPROTEIN
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MMBR References
|
J Gen Microbiol. 1992;138(6):1109-16.
Nucleotide sequence of the rhaR-sodA interval specifying rhaT in Escherichia coli.
Garcia-Martin C, Baldoma L, Badia J, Aguilar J.
(
1339463
)
|
FEMS Microbiol Lett. 1990;60(1-2):103-7.
Cloning, mapping and gene product identification of rhaT from Escherichia coli K12.
Baldoma L, Badia J, Sweet G, Aguilar J.
(
2283027
)
|
J Biol Chem. 1992;267:6923-6932
Mapping, cloning, expression, and sequencing of the rhaT gene, which encodes a novel L-rhamnose-H+ transport protein in Salmonella typhimurium and Escherichia coli.
Tate, C. G., J. A. Muiry, and P. J. F. Henderson.
|
J Biol Chem. 1993;268:26850-26857
Membrane topology of the L-rhamnose-H+ transport protein (RhaT) from enterobacteria.
Tate, C. G., and P. J. F. Henderson.
|
Microbiology 1996;142:1833-1840
Transcriptional regulation of the Escherichia coli rhaT gene.
Via, P., J. Badia, L. Baldoma, N. Obradors, and J. Aguilar.
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| Sequences |
Amino acid
FASTA format
|
0001 MSNAITMGIF WHLIGAASAA CFYAPFKKVK KWSWETMWSV GGIVSWIILP WAISALLLPN FWAYYSSFSL
0071 STRLPVFLFG AMWGIGNINY GLTMRYLGMS MGIGIAIGIT LIVGTLMTPI INGNFDVLIS TEGGRMTLLG
0141 VLVALIGVGI VTRAGQLKER KMGIKAEEFN LKKGLVLAVM CGIFSAGMSF AMNAAKPMHE AAAALGVDPL
0211 YVALPSYVVI MGGGAIINLG FCFIRLAKVK DLSLKADFSL AKSLIIHNVL LSTLGGLMWY LQFFFYAWGH
0281 ARIPAQYDYI SWMLHMSFYV LCGGIVGLVL KEWNNAGRRP VTVLSLGCVV IIVAANIVGI GMAN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tcgacaacgg cggcaacagg cgaaaggtta
-070 atcgacagca cgatttttac actcatctcg tcggagatgt gacgcgacga aaaatgatga ggataagaag
0001 atgagtaacg cgattacgat ggggatattt tggcatttga tcggcgcggc cagtgcagcc tgtttttacg
0071 ctccgttcaa aaaagtaaaa aaatggtcat gggaaaccat gtggtcagtc ggtgggattg tttcgtggat
0141 tattctgccg tgggccatca gcgccctgtt actaccgaat ttctgggcgt attacagctc gtttagtctc
0211 tctacgcgac tgcctgtttt tctgttcggc gctatgtggg ggatcggtaa tatcaactac ggcctgacca
0281 tgcgttatct cggcatgtcg atgggaattg gcatcgccat tggcattacg ttgattgtcg gtacgctgat
0351 gacgccaatt atcaacggca atttcgatgt gttgattagc accgaaggcg gacgcatgac gttgctcggc
0421 gttctggtgg cgctgattgg cgtagggatt gtaactcgcg ccgggcagtt gaaagagcgc aagatgggca
0491 ttaaagccga agagttcaat ctgaaaaaag ggctggtgct ggcggtgatg tgcggcattt tctctgccgg
0561 gatgtccttt gcgatgaacg ccgcaaaacc gatgcatgaa gccgctgccg cacttggcgt cgatccactg
0631 tatgtcgctc tgccaagcta tgttgtcatc atgggcggcg gcgcgatcat taacctcggt ttctgtttta
0701 ttcgtctggc aaaagtgaag gatttgtcgc taaaagccga cttctcgctg gcaaaatcgc tgatcattca
0771 caatgtgtta ctctcgacac tgggcgggtt gatgtggtat ctgcaattct ttttctatgc ctggggccac
0841 gcccgcattc cggcgcagta tgactacatc agttggatgc tgcatatgag tttctatgta ttgtgcggcg
0911 gtatcgtcgg gctggtgctg aaagagtgga acaatgcagg acgccgtccg gtaacggtgt tgagcctcgg
0981 ttgtgtggtg attattgtcg ccgctaacat cgtcggcatc ggcatggcga attaatcttt ctgcgaattg
1051 agatgacgcc actggctggg cgtcatcccg gtttcccggg taaacaccac cgaaaaatag ttactatctt
1121 caaagccaca ttcgg
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