|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR07
(D)
,
DE(rhaD-tpiA)269
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rhaR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rhaR
Search strains by all related name:
rhaR b3906 ECK3899 JW3877 rhaC rhaC1
|
General information (Go to Linear View: )
|
|
Gene Name
|
rhaR
|
|
Alternative name
|
b3906,ECK3899,JW3877,rhaC,rhaC1
|
|
Location, Length
|
4,096,669 - 4,097,517
(
+
)
;
88.30
min
;
849
(bp) ,
282
(aa)
|
|
Product
|
DNA-binding transcriptional activator for rhaSR, L-rhamnose-binding
|
|
Operon Name
|
rhaSR
|
|
Note
|
positive regulator for rhaRS operon; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016563 - transcription activator activity; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0006350 - transcription
|
|
Function
|
regulator; Degradation of small molecules: Carbon compounds
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( rhaR )
GO:0003700
;
transcription factor activity ( rhaR )
GO:0005622
;
intracellular ( rhaR )
GO:0005737
;
cytoplasm ( rhaR )
GO:0006350
;
transcription ( rhaR )
GO:0006355
;
regulation of transcription, DNA-dependent ( rhaR )
GO:0019299
;
rhamnose metabolic process ( rhaR )
GO:0043565
;
sequence-specific DNA binding ( rhaR )
GO:0045893
;
positive regulation of transcription, DNA-dependent ( rhaR )
|
|
PID
|
171474011
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
RHAR_ECOLI
(
P09378
)
|
|
- Protein name
|
L-rhamnose operon transcriptional activator rhaR.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=rhaR; Synonyms=rhaC1; OrderedLocusNames=b3906;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rhaR
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of The E. Coli Rob Transcription Factor In Complex With Dna
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
HTH-type transcriptional activator rhaR
|
|
PSI-BLAST
|
HTH-type transcriptional activator rhaR
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
RhaR [Broad host range vector pSCrhaB2]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
RGD
HTH_ARAC_FAMILY_1
|
|
MMBR References
|
Nucleic Acids Res. 1993;21:3391-3398
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
Plunkett, G., V. D. Burland, D. L. Daniels, and F. R. Blattner.
|
J Mol Biol. 1987;196(4):789-99.
Positive regulation of the Escherichia coli L-rhamnose operon is mediated by the products of tandemly repeated regulatory genes.
Tobin JF, Schleif RF.
(
3316663
)
|
Microbiology 1996;142:1833-1840
Transcriptional regulation of the Escherichia coli rhaT gene.
Via, P., J. Badia, L. Baldoma, N. Obradors, and J. Aguilar.
|
| Sequences |
Amino acid
FASTA format
|
0001 MAHQLKLLKD DFFASDQQAV AVADRYPQDV FAEHTHDFCE LVIVWRGNGL HVLNDRPYRI TRGDLFYIHA
0071 DDKHSYASVN DLVLQNIIYC PERLKLNLDW QGAIPGFNAS AGQPHWRLGS MGMAQARQVI GQLEHESSQH
0141 VPFANEMAEL LFGQLVMLLN RHRYTSDSLP PTSSETLLDK LITRLAASLK SPFALDKFCD EASCSERVLR
0211 QQFRQQTGMT INQYLRQVRV CHAQYLLQHS RLLISDISTE CGFEDSNYFS VVFTRETGMT PSQWRHLNSQ
0281 KD
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CAGGGACGGG ATGGCTTTCT GCAATAACGC
-070 GAATCTTCTC AACGTATTTG TACGCCATAT TGCGAATAAT CAACTTCGTT CTCTGGCCGA GGTAGCCACG
0001 gtggcgcatc agttaaaact tctcaaagat gatttttttg ccagcgacca gcaggcagtc gctgtggctg
0071 accgttatcc gcaagatgtc tttgctgaac atacacatga tttttgtgag ctggtgattg tctggcgcgg
0141 taatggcctg catgtactca acgatcgccc ttatcgcatt acccgtggcg atctctttta cattcatgct
0211 gacgataaac actcctacgc ttccgttaac gatctggttt tgcagaatat tatttattgc ccggagcgtc
0281 tgaagctgaa tcttgactgg cagggggcga ttccgggatt taacgccagc gcagggcaac cacactggcg
0351 cttaggtagc atggggatgg cgcaggcgcg gcaggttatc ggtcagcttg agcatgaaag tagtcagcat
0421 gtgccgtttg ctaacgaaat ggctgagttg ctgttcgggc agttggtgat gttgctgaat cgccatcgtt
0491 acaccagtga ttcgttgccg ccaacatcca gcgaaacgtt gctggataag ctgattaccc ggctggcggc
0561 tagcctgaaa agtccctttg cgctggataa attttgtgat gaggcatcgt gcagtgagcg cgttttgcgt
0631 cagcaatttc gccagcagac tggaatgacc atcaatcaat atctgcgaca ggtcagagtg tgtcatgcgc
0701 aatatcttct ccagcatagc cgcctgttaa tcagtgatat ttcgaccgaa tgtggctttg aagatagtaa
0771 ctatttttcg gtggtgttta cccgggaaac cgggatgacg cccagccagt ggcgtcatct caattcgcag
0841 aaagattaaT TCGCCATGCC GATGCCGACG ATGTTAGCGG CGACAATAAT CACCACACAA CCGAGGCTCA
0911 ACACCGTTAC CGGACGGCGT CCTGCATTGT TCCACTCTT
|
