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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
|
OCR07
(D)
,
DE(rhaD-tpiA)269
|
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Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
rhaA
|
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Related strains
|
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Strains Search
|
Search strains by gene name:
rhaA
Search strains by all related name:
rhaA b3903 ECK3896 JW5561
|
General information (Go to Linear View: )
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Gene Name
|
rhaA
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Alternative name
|
b3903,ECK3896,JW5561
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Location, Length
|
4,092,746 - 4,094,005
(
-
)
;
88.21
min
;
1260
(bp) ,
419
(aa)
|
|
Product
|
L-rhamnose isomerase
|
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Operon Name
|
rhaBAD
|
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Note
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GO_process: GO:0016052 - carbohydrate catabolic process
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Function
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enzyme; Degradation of small molecules: Carbon compounds
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Gene Ontology
|
GO:0005737
;
cytoplasm ( rhaA )
GO:0008270
;
zinc ion binding ( rhaA )
GO:0008740
;
L-rhamnose isomerase activity ( rhaA )
GO:0016853
;
isomerase activity ( rhaA )
GO:0019299
;
rhamnose metabolic process ( rhaA )
GO:0030145
;
manganese ion binding ( rhaA )
GO:0046872
;
metal ion binding ( rhaA )
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PID
|
48994990
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EC number
(KEGG Pathway)
|
5.3.1.14
|
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SWISS-PROT
(
Show details
[
2
more]
)
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Entry name(Acc.no)
|
RHAA_ECOLI
(
P32170
)
|
|
- Protein name
|
L-rhamnose isomerase
|
|
- Synonyms
|
EC 5.3.1.14
|
|
- Gene name
|
Name=rhaA; OrderedLocusNames=b3903;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
|
rhaA
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, L-Rhamnose Isomerase
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SWISS-PROT
(database updated :
2007.02.20
)
|
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BLAST
|
L-rhamnose isomerase
|
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PSI-BLAST
|
L-rhamnose isomerase
|
|
nr
(database updated :
2007.02.20
)
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BLAST
|
L-rhamnose isomerase [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
|
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PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
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MMBR References
|
J Bacteriol. 1993;175:5585-5594
Sequencing and characterization of a gene cluster encoding the enzymes for L-rhamnose metabolism in Escherichia coli.
Moralejo, P., S. M. Egan, E. Hidalgo, and J. Aguilar.
|
Nucleic Acids Res. 1993;21:3391-3398
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
Plunkett, G., V. D. Burland, D. L. Daniels, and F. R. Blattner.
|
J Mol Biol. 1987;196(4):789-99.
Positive regulation of the Escherichia coli L-rhamnose operon is mediated by the products of tandemly repeated regulatory genes.
Tobin JF, Schleif RF.
(
3316663
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MTTQLEQAWE LAKQRFAAVG IDVEEALRQL DRLPVSMHCW QGDDVSGFEN PEGSLTGGIQ ATGNYPGKAR
0071 NASELRADLE QAMRLIPGPK RLNLHAIYLE SDTPVSRDQI KPEHFKNWVE WAKANQLGLD FNPSCFSHPL
0141 SADGFTLSHA DDSIRQFWID HCKASRRVSA YFGEQLGTPS VMNIWIPDGM KDITVDRLAP RQRLLAALDE
0211 VISEKLNPAH HIDAVESKLF GIGAESYTVG SNEFYMGYAT SRQTALCLDA GHFHPTEVIS DKISAAMLYV
0281 PQLLLHVSRP VRWDSDHVVL LDDETQAIAS EIVRHDLFDR VHIGLDFFDA SINRIAAWVI GTRNMKKALL
0351 RALLEPTAEL RKLEAAGDYT ARLALLEEQK SLPWQAVWEM YCQRHDTPAG SEWLESVRAY EKEILSRRG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ccaccgcgaa tctgaccacc tttaccccta
-070 atcctgacag tgaaattgcc cactatgtgg cgcagattca ctctacacga cagacaaagg agctttgcgc
0001 atgaccactc aactggaaca ggcctgggag ctagcgaaac agcgtttcgc ggcggtgggg attgatgtcg
0071 aggaggcgct gcgccaactt gatcgtttac ccgtttcaat gcactgctgg cagggcgatg atgtttccgg
0141 ttttgaaaac ccggaaggtt cgctgaccgg ggggattcag gccacaggca attatccggg caaagcgcgt
0211 aatgccagtg agctacgtgc cgatctggaa caggctatgc ggctgattcc ggggccgaaa cggcttaatt
0281 tacatgccat ctatctggaa tcagatacgc cagtctcgcg cgaccagatc aaaccagagc acttcaaaaa
0351 ctgggttgaa tgggcgaaag ccaatcagct cggtctggat tttaacccct cctgcttttc gcatccgcta
0421 agcgccgatg gctttacgct ttcccatgcc gacgacagca ttcgccagtt ctggattgat cactgcaaag
0491 ccagccgtcg cgtttcggcc tattttggcg agcaactcgg cacaccatcg gtgatgaaca tctggatccc
0561 ggatggtatg aaagatatca ccgttgaccg tctcgccccg cgtcagcgtc tgctggcagc actggatgag
0631 gtgatcagcg agaagctaaa ccctgcgcac catatcgacg ccgttgagag caaattgttt ggcattggcg
0701 cagagagcta cacggttggc tccaatgagt tttacatggg gtatgccacc agccgccaga ctgcgctgtg
0771 cctggacgcc gggcacttcc acccgactga agtgatttcc gacaagattt ccgccgccat gctgtatgtg
0841 ccgcagttgc tgctgcacgt cagccgtccg gttcgctggg acagcgatca cgtagtgctg ctggatgatg
0911 aaacccaggc aattgccagt gagattgtgc gtcacgatct gtttgaccgg gtgcatatcg gccttgactt
0981 cttcgatgcc tctatcaacc gcattgccgc gtgggtcatt ggtacacgca atatgaaaaa agccctgctg
1051 cgtgcgttgc tggaacctac cgctgagctg cgcaagctgg aagcggcggg cgattacact gcgcgtctgg
1121 cactgctgga agagcagaaa tcgttgccgt ggcaggcggt ctgggaaatg tattgccaac gtcacgatac
1191 gccagcaggt agcgaatggc tggagagcgt gcgggcttat gagaaagaaa ttttgagtcg ccgcgggtaa
1261 acactgccgg atgcggcgcg agcgccttat ccggcctacg ggtcggcaac agttgtaggc ctgataagac
1331 gcgacagcgt cgcatcaggc attgattgcc
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