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PEC Original Annotations
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Essentiality
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Class
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non-essential
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|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
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Deletion
|
OCR38
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
psiF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
psiF
Search strains by all related name:
psiF b0384 ECK0379 JW5054
|
General information (Go to Linear View: )
|
|
Gene Name
|
psiF
|
|
Alternative name
|
b0384,ECK0379,JW5054
|
|
Location, Length
|
402,505 - 402,825
(
+
)
;
8.68
min
;
321
(bp) ,
106
(aa)
|
|
Product
|
conserved protein, PsiF family, pho regulon
|
|
Operon Name
|
phoA-psiF
|
|
Note
|
induced by phosphate starvation; GO_process: GO:0006793 - phosphorus metabolic process; GO_process: GO:0042594 - response to starvation
|
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Function
|
phenotype; Central intermediary metabolism: Phosphorus compounds
|
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Gene Ontology
|
|
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PID
|
87081731
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
PSIF_ECOLI
(
P27295
)
|
|
- Protein name
|
Phosphate starvation-inducible protein psiF precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=psiF; OrderedLocusNames=b0384, c0491;
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Homology Analysis
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BLAST
|
|
Bacteria
|
|
GTOP
|
psiF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Phosphate starvation-inducible protein psiF precursor
|
|
PSI-BLAST
|
Phosphate starvation-inducible protein psiF precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
induced by phosphate starvation [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
|
|
MMBR References
|
J Bacteriol. 1990;172(6):3191-200.
Identification of phosphate starvation-inducible genes in Escherichia coli K-12 by DNA sequence analysis of psi::lacZ(Mu d1) transcriptional fusions.
Metcalf WW, Steed PM, Wanner BL.
(
2160940
)
|
J Bacteriol. 1981;146(1):93-101.
Use of bacteriophage transposon Mu d1 to determine the orientation for three proC-linked phosphate-starvation-inducible (psi) genes in Escherichia coli K-12.
Wanner BL, Wieder S, McSharry R.
(
6260750
)
|
Gene. 1986;44(1):121-5.
Nucleotide sequence of the alkaline phosphatase gene of Escherichia coli.
Chang CN, Kuang WJ, Chen EY.
(
3533724
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MKITLLVTLL FGLVFLTTVG AAERTLTPQQ QRMTSCNQQA TAQALKGDAR KTYMSDCLKN SKSAPGEKSL
0071 TPQQQKMREC NNQATQQSLK GDDRNKFMSA CLKKAA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATTTTCGCTG CCGGGTGGTT TTTTTGCTGT
-070 TAGCAACCAG ACTTAATGGC AGATCACGGG CGCATACGCT CATGGTTAAA ACATGAAGAG GGATGGTGCT
0001 atgaaaataa cattactggt taccttgctt ttcggtctgg tttttttaac caccgtcggc gctgccgaga
0071 gaactttaac cccacaacaa cagcgtatga cctcctgtaa tcagcaggcg acggcgcagg cgttgaaagg
0141 ggatgctcgt aagacctaca tgagtgattg cctgaagaac agcaagtctg cgcctggcga aaaaagtttg
0211 acgccacagc agcaaaagat gcgcgaatgc aataatcaag caacacaaca atctctgaaa ggtgatgatc
0281 gtaataagtt tatgagtgcc tgcctcaaga aagccgcctg aTACCTGATA GTGCTAACGG GTGAGCTACG
0351 AAAATGGCTC ACCCGAAATA TCATACTTCT GCCTTTAGCT CCGTCTCTAT AATTTGGGAA AATTGTTTCT
0421 G
|
