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PEC Original Annotations
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|
Essentiality
|
|
Class
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non-essential
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|
References (PMID)
|
J Gen Microbiol. 1988;134(12):3129-39.
Mutants of Escherichia coli specifically deficient in respiratory formate dehydrogenase activity.
Mandrand-Berthelot MA, Couchoux-Luthaud G, Santini CL, Giordano G.
(
3077634
)
|
|
|
Deletion
|
OCR07
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
fdhE
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
fdhE
Search strains by all related name:
fdhE b3891 ECK3884 f309 JW3862
|
General information (Go to Linear View: )
|
|
Gene Name
|
fdhE
|
|
Alternative name
|
b3891,ECK3884,f309,JW3862
|
|
Location, Length
|
4,078,322 - 4,079,251
(
-
)
;
87.90
min
;
930
(bp) ,
309
(aa)
|
|
Product
|
formate dehydrogenase formation protein
|
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Operon Name
|
fdoGHI-fdhE
|
|
Note
|
affects formate dehydrogenase-N; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006457 - protein folding
|
|
Function
|
phenotype; Energy metabolism, carbon: Anaerobic respiration
|
|
Gene Ontology
|
GO:0005737
;
cytoplasm ( fdhE )
|
|
PID
|
1790324
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
FDHE_ECOLI
(
P13024
)
|
|
- Protein name
|
Protein fdhE.
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|
- Synonyms
|
|
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- Gene name
|
Name=fdhE; OrderedLocusNames=b3891;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
fdhE
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, The Crystal Structure Of The Fdhe Protein From Pseudomonas Aeruginosa
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein fdhE
|
|
PSI-BLAST
|
Protein fdhE
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
formate dehydrogenase accessory protein FdhE [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
J Gen Microbiol. 1988;134(12):3129-39.
Mutants of Escherichia coli specifically deficient in respiratory formate dehydrogenase activity.
Mandrand-Berthelot MA, Couchoux-Luthaud G, Santini CL, Giordano G.
(
3077634
)
|
J Bacteriol. 1988;170(2):775-80.
Disruption of the Escherichia coli cls gene responsible for cardiolipin synthesis.
Nishijima S, Asami Y, Uetake N, Yamagoe S, Ohta A, Shibuya I.
(
2828323
)
|
Nucleic Acids Res. 1993;21:3391-3398
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
Plunkett, G., V. D. Burland, D. L. Daniels, and F. R. Blattner.
|
J Bacteriol. 1990;172(10):6112-21.
Identification and expression of the Escherichia coli fdhD and fdhE genes, which are involved in the formation of respiratory formate dehydrogenase.
Schlindwein C, Giordano G, Santini CL, Mandrand MA.
(
2170340
)
|
J Bacteriol. 1991;173(14):4417-23.
Genetic evidence that genes fdhD and fdhE do not control synthesis of formate dehydrogenase-N in Escherichia coli K-12.
Stewart V, Lin JT, Berg BL.
(
1648557
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MSIRIIPQDE LGSSEKRTAD MIPPLLFPRL KNLYNRRAER LRELAENNPL GDYLRFAALI AHAQEVVLYD
0071 HPLEMDLTAR IKEASAQGKP PLDIHVLPRD KHWQKLLMAL IAELKPEMSG PALAVIENLE KASTQELEDM
0141 ASALFASDFS SVSSDKAPFI WAALSLYWAQ MANLIPGKAR AEYGEQRQYC PVCGSMPVSS MVQIGTTQGL
0211 RYLHCNLCET EWHVVRVKCS NCEQSGKLHY WSLDDEQAAI KAESCDDCDT YLKILYQEKD PKIEAVADDL
0281 ASLVLDARME QEGYARSSIN PFLFPGEGE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttaccgccat ggtggaagga tgggttacca
-070 gcgcctgggc gaagaaacat cacccgcgct ggtaccgtga ggtccgcaag acaacggaaa agaaagctga
0001 atgagtattc gcataatccc gcaagatgag ctgggttcaa gcgagaaacg tacggcggat atgattccgc
0071 cgttattgtt ccctcggctc aagaatttat acaaccgccg cgccgagcgt ctgcgcgagc tggcagaaaa
0141 taatcctctg ggtgattacc tgcgctttgc tgcgcttatc gcccacgccc aggaagtggt gctgtacgac
0211 catccgctgg agatggatct gactgcgcgc attaaagaag ccagcgcaca aggcaagccc ccgctggata
0281 ttcacgttct gccgcgtgat aagcactggc aaaagctgct gatggcgctg attgctgagc tgaaacctga
0351 aatgagcggc ccggcgctgg cagtgattga gaatctggag aaggcatcga ctcaggagct ggaagatatg
0421 gccagcgcgc tgtttgcctc tgatttctcg tccgtcagca gcgataaagc gccgtttatc tgggctgcac
0491 tgtcgctcta ctgggcgcag atggccaatc tgatccccgg caaagcccgc gctgaatacg gcgagcaacg
0561 tcaatattgc ccggtttgtg gttctatgcc ggtgtccagc atggtgcaaa ttggcaccac tcaggggcta
0631 cgttacctgc actgcaacct gtgtgaaact gaatggcacg tagtgcgcgt aaaatgcagc aactgcgagc
0701 agagcggcaa actgcattac tggtcgctgg atgacgaaca ggccgcgatt aaagccgaaa gctgcgatga
0771 ctgcgacact tacctgaaaa ttctctatca ggaaaaagat ccaaaaatcg aagccgtagc agatgacctc
0841 gcctctctgg tactggacgc acgaatggag caagaaggct atgcccgcag ttccatcaac ccgttcctgt
0911 ttccgggtga aggagagtaa tctctgacgt tttccgggtg gcgcaggtcg cccggattac agctcatagg
0981 gtgtgacgac accatctctc gtattccgcg ttaccacctc aagctatgcc
|
