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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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OCR01,2-3 (AK4-14 / BK5-14)
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
hdfR
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Related strains
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Strains Search
|
Search strains by gene name:
hdfR
Search strains by all related name:
hdfR apeR? b3762 b3763 b4480 ECK3756 f133 JW5607 yifA yifD
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General information (Go to Linear View: )
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Gene Name
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hdfR
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Alternative name
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apeR?,b3762,b3763,b4480,ECK3756,f133,JW5607,yifA,yifD
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Location, Length
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3,945,151 - 3,945,990
(
-
)
;
85.03
min
;
840
(bp) ,
279
(aa)
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Product
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DNA-binding transcriptional regulator
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Operon Name
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hdfR
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Note
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transcriptional regulator of the flhDC operon; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription
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Function
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2.2.2 information transfer; RNA related; transcription related,3.1.2.3 regulation; type of regulation; transcriptional level; repressor,3.3.1 regulation; genetic unit regulated; operon,7.1 location of gene products; cytoplasm
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Gene Ontology
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GO:0003677
;
DNA binding ( hdfR )
GO:0003700
;
transcription factor activity ( hdfR )
GO:0006350
;
transcription ( hdfR )
GO:0006355
;
regulation of transcription, DNA-dependent ( hdfR )
GO:0045892
;
negative regulation of transcription, DNA-dependent ( hdfR )
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PID
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48994962
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
[
1
more]
)
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Entry name(Acc.no)
|
HDFR_ECOLI
(
P27826
;
P22788; Q9KHQ8
)
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- Protein name
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HTH-type transcriptional regulator hdfR
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- Synonyms
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H-NS-depdendent flhDC regulator
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- Gene name
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OrderedLocusNames=b3762/b3763, SF3839, S3921;
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MMBR References
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J Biol Chem. 1983;258:9963-9967
A trans-acting regulatory mutation that causes overproduction of phosphatidylserine synthase in Escherichia coli.
Sparrow, C. P., and C. R. Raetz.
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Gene. 1991;97(1):21-7.
Sequence and transcriptional activity of the Escherichia coli K-12 chromosome region between rrnC and ilvGMEDA.
Coppola G, Huang F, Riley J, Cox JL, Hantzopoulos P, Zhou LB, Calhoun DH.
(
1995430
)
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| Sequences |
Amino acid
FASTA format
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0001 MDTELLKTFL EVSRTRHFGR AAESLYLTQS AVSFRIRQLE NQLGVNLFTR HRNNIRLTAA GEKLLPYAET
0071 LMSTWQAARK EVAHTSRHNE FSIGASASLW ECMLNQWLGR LYQNQDAHTG LQFEARIAQR QSLVKQLHER
0141 QLDLLITTEA PKMDEFSSQL LGYFTLALYT SAPSKLKGDL NYLRLEWGPD FQQHEAGLIG ADEVPILTTS
0211 SAELAQQQIA MLNGCTWLPV SWARKKGGLH TVVDSTTLSR PLYAIWLQNS DKNALIRDLL KINVLDEVY
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tttgaccgag ctagttatgg cgcggagtat
-070 tagttacgct tgacagagtg taaaacaaaa catttaaatc ataacgacaa ataattttgc ggagagcact
0001 gtggatacgg aattgttaaa aactttcctg gaagttagcc gaacgcgtca ctttggtcga gcggctgaat
0071 cgctctatct gacccagtca gcagtgagct ttcgaatcag acaactggaa aatcaactgg gtgtgaacct
0141 tttcacccgc cacagaaaca atatccgttt aaccgctgcc ggtgaaaaac tactgcctta tgcagaaacg
0211 ctcatgagca cctggcaggc cgcccgtaag gaggtggcgc atacctcacg acataacgag ttttctatcg
0281 gtgccagcgc ctcgttgtgg gaatgtatgc ttaatcagtg gctgggacgc ttgtatcaaa atcaggatgc
0351 ccatacaggc ttacagttcg aagcgcgaat tgcccaacgg cagtctctgg taaaacagct gcatgaacgc
0421 cagcttgatc ttcttattac cactgaagcg cccaaaatgg acgaatttag tagtcagttg ctgggatatt
0491 tcactttagc gctttatacc agtgcccctt caaaactaaa gggagatctt aattatctgc gacttgagtg
0561 ggggccagat tttcaacagc atgaggcagg tttgatcggt gctgacgaag tgcccattct gacaaccagt
0631 tctgctgaac tggcacagca acagattgcg atgcttaatg gttgcacctg gctacccgtc agctgggcgc
0701 gtaaaaaagg cggcctgcat accgttgtcg atagcacaac actttcacgg ccgctttatg ccatatggct
0771 gcaaaatagc gataaaaatg cgttgattcg cgatcttttg aaaattaacg tgctggatga agtgtattaa
0841 tatgaatggc tggcaaggat gccggtagaa ggatttactt cggagagggt tatttcagat aaaaaaaatc
0911 cttagctttc gctaaggatg atttctggca
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