MG1655
W3110
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Gene Report : rbsD
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
J Biol Chem. 1999;274(20):14006-11.
A mutated PtsG, the glucose transporter, allows uptake of D-ribose.
Oh H, Park Y, Park C. ( 10318813 )
     Deletion OCR01-1 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  rbsD
Related strains
     Strains Search Search strains by gene name:  rbsD   Search strains by all related name:  rbsD b3748 ECK3742 JW5857 rbsP

General information  (Go to Linear View:)
 Gene Name rbsD  
 Alternative name b3748,ECK3742,JW5857,rbsP  
 Location, Length 3,931,374 - 3,931,793 (  +  ) ;   84.73 min ; 420 (bp) ,   139 (aa) Go to Linear View
 Product putative cytoplasmic sugar-binding protein  
 Operon Name rbsDACBKR  
 Note D-ribose high-affinity transport system; membrane-associated protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process  
 Function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols  
 Gene Ontology GO:0005351; sugar:hydrogen ion symporter activity ( rbsD )
GO:0005886; plasma membrane ( rbsD )
GO:0006810; transport ( rbsD )
GO:0008643; carbohydrate transport ( rbsD )
GO:0016020; membrane ( rbsD )
 PID 87082327  
 EC number
  (KEGG Pathway)
 
 
SWISS-PROT  ( Show details [ 2 more] )
  botton Entry name(Acc.no) RBSD_ECOLI ( P04982 )
    -  Protein name High affinity ribose transport protein rbsD.  
    -  Synonyms  
    -  Gene name Name=rbsD; OrderedLocusNames=b3748;  

 Linear View (Whole Mode)
View Location
   3920.0  –  3945.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP rbsD (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With D-Ribose  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST High affinity ribose transport protein rbsD  
         PSI-BLAST High affinity ribose transport protein rbsD
    nr     (database updated : 2007.02.20 )
         BLAST alternate gene name rbsP  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    CAMP_PHOSPHO_SITE    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    TYR_PHOSPHO_SITE    MYRISTYL     

Other Cross-Reference
    COG COG1869G 
    EcoCyc rbsD 

MMBR References
J Biol Chem. 1986;261:7652-7658
The nucleotide sequences of the rbsD, rbsA and rbsC genes of Escherichia coli K12.
Bell, A. W., S. D. Buckel, J. M. Groarke, J. N. Hope, D. H. Kingsley, and A. Hermodsen.

Sequences
Amino acid
FASTA format
0001 MKKGTVLNSD ISSVISRLGH TDTLVVCDAG LPIPKSTTRI DMALTQGVPS FMQVLGVVTN EMQVEAAIIA 
0071 EEIKHHNPQL HETLLTHLEQ LQKHQGNTIE IRYTTHEQFK QQTAESQAVI RSGECSPYAN IILCAGVTF

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             TTTCGAGGTT GATCACATTT CCGTAACGTC 
-070 ACGATGGTTT TCCCAACTCA GTCAGGATTA AACTGTGGGT CAGCGAAACG TTTCGCTGAT GGAGAAAAAA 
0001 atgaaaaaag gcaccgttct taattctgat atttcatcgg tgatctcccg tctgggacat accgatacgc 
0071 tggtggtgtg tgatgctggt ttacccatcc ccaaaagtac aacgcgtatc gatatggcat taacccaggg 
0141 tgtaccttct tttatgcagg tgctgggcgt cgtcacaaat gaaatgcagg tcgaggcggc cattatcgcg 
0211 gaagagatca aacaccataa tccgcaactc cacgaaacgt tgctcactca ccttgagcag ctgcaaaaac 
0281 accagggaaa taccattgaa attcgttaca ccacgcatga acaattcaaa caacaaaccg cagaaagtca 
0351 ggcggtaatt cgcagcggag aatgttctcc gtatgcgaat atcattctct gtgctggcgt gacgttctga 
0421 GGCCGTCATG GAAGCATTAC TTCAGCTTAA AGGCATCGAT AAAGCCTTCC CGGGCGTAAA AGCCCTCTCG 
0491 GGCGCAGCGT TAAATGTCTA TCCGGGCCGC