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PEC Original Annotations
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Essentiality
|
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Class
|
non-essential
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|
References (PMID)
|
J Biol Chem. 1999;274(20):14006-11.
A mutated PtsG, the glucose transporter, allows uptake of D-ribose.
Oh H, Park Y, Park C.
(
10318813
)
|
|
|
Deletion
|
OCR01-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rbsD
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Related strains
|
|
Strains Search
|
Search strains by gene name:
rbsD
Search strains by all related name:
rbsD b3748 ECK3742 JW5857 rbsP
|
General information (Go to Linear View: )
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Gene Name
|
rbsD
|
|
Alternative name
|
b3748,ECK3742,JW5857,rbsP
|
|
Location, Length
|
3,931,374 - 3,931,793
(
+
)
;
84.73
min
;
420
(bp) ,
139
(aa)
|
|
Product
|
putative cytoplasmic sugar-binding protein
|
|
Operon Name
|
rbsDACBKR
|
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Note
|
D-ribose high-affinity transport system; membrane-associated protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process
|
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Function
|
transport; Transport of small molecules: Carbohydrates, organic acids, alcohols
|
|
Gene Ontology
|
GO:0005351
;
sugar:hydrogen ion symporter activity ( rbsD )
GO:0005886
;
plasma membrane ( rbsD )
GO:0006810
;
transport ( rbsD )
GO:0008643
;
carbohydrate transport ( rbsD )
GO:0016020
;
membrane ( rbsD )
|
|
PID
|
87082327
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
RBSD_ECOLI
(
P04982
)
|
|
- Protein name
|
High affinity ribose transport protein rbsD.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=rbsD; OrderedLocusNames=b3748;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rbsD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With D-Ribose
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
High affinity ribose transport protein rbsD
|
|
PSI-BLAST
|
High affinity ribose transport protein rbsD
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
alternate gene name rbsP
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
|
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MMBR References
|
J Biol Chem. 1986;261:7652-7658
The nucleotide sequences of the rbsD, rbsA and rbsC genes of Escherichia coli K12.
Bell, A. W., S. D. Buckel, J. M. Groarke, J. N. Hope, D. H. Kingsley, and A. Hermodsen.
|
| Sequences |
Amino acid
FASTA format
|
0001 MKKGTVLNSD ISSVISRLGH TDTLVVCDAG LPIPKSTTRI DMALTQGVPS FMQVLGVVTN EMQVEAAIIA
0071 EEIKHHNPQL HETLLTHLEQ LQKHQGNTIE IRYTTHEQFK QQTAESQAVI RSGECSPYAN IILCAGVTF
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTTCGAGGTT GATCACATTT CCGTAACGTC
-070 ACGATGGTTT TCCCAACTCA GTCAGGATTA AACTGTGGGT CAGCGAAACG TTTCGCTGAT GGAGAAAAAA
0001 atgaaaaaag gcaccgttct taattctgat atttcatcgg tgatctcccg tctgggacat accgatacgc
0071 tggtggtgtg tgatgctggt ttacccatcc ccaaaagtac aacgcgtatc gatatggcat taacccaggg
0141 tgtaccttct tttatgcagg tgctgggcgt cgtcacaaat gaaatgcagg tcgaggcggc cattatcgcg
0211 gaagagatca aacaccataa tccgcaactc cacgaaacgt tgctcactca ccttgagcag ctgcaaaaac
0281 accagggaaa taccattgaa attcgttaca ccacgcatga acaattcaaa caacaaaccg cagaaagtca
0351 ggcggtaatt cgcagcggag aatgttctcc gtatgcgaat atcattctct gtgctggcgt gacgttctga
0421 GGCCGTCATG GAAGCATTAC TTCAGCTTAA AGGCATCGAT AAAGCCTTCC CGGGCGTAAA AGCCCTCTCG
0491 GGCGCAGCGT TAAATGTCTA TCCGGGCCGC
|
