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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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|
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Deletion
|
OCR01-1
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
ravA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ravA
Search strains by all related name:
ravA b3746 ECK3740 f506 JW3725 yieN
|
General information (Go to Linear View: )
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Gene Name
|
ravA
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|
Alternative name
|
b3746,ECK3740,f506,JW3725,yieN
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Location, Length
|
3,927,620 - 3,929,116
(
-
)
;
84.65
min
;
1497
(bp) ,
498
(aa)
|
|
Product
|
fused predicted transcriptional regulator:sigma54 activator protein/conserved protein
|
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Operon Name
|
ravA-viaA
|
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Note
|
putative 2-component regulator
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Function
|
putative regulator; Not classified
|
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Gene Ontology
|
GO:0000166
;
nucleotide binding ( ravA )
GO:0005524
;
ATP binding ( ravA )
GO:0005737
;
cytoplasm ( ravA )
GO:0016787
;
hydrolase activity ( ravA )
GO:0016887
;
ATPase activity ( ravA )
GO:0017111
;
nucleoside-triphosphatase activity ( ravA )
|
|
PID
|
87082326
|
EC number
(KEGG Pathway)
|
|
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SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YIEN_ECOLI
(
P31473
)
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|
- Protein name
|
Hypothetical protein yieN.
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- Synonyms
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- Gene name
|
Name=yieN; OrderedLocusNames=b3746;
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Homology Analysis
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BLAST
|
|
Bacteria
|
|
GTOP
|
yieN
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of A Sigma54-Activator Suggests The Mechanism For The Conformational Switch Necessary For Sigma54 Binding
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
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BLAST
|
ATPase ravA
|
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PSI-BLAST
|
Chaperone clpB
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
fused predicted transcriptional regulators [Escherichia coli W3110]
|
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
|
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PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MAHPHLLAER ISRLSSSLEK GLYERSHAIR LCLLAALSGE SVFLLGPPGI AKSLIARRLK FAFQNARAFE
0071 YLMTRFSTPE EVFGPLSIQA LKDEGRYERL TSGYLPEAEI VFLDEIWKAG PAILNTLLTA INERQFRNGA
0141 HVEKIPMRLL VAASNELPEA DSSLEALYDR MLIRLWLDKV QDKANFRSML TSQQDENDNP VPDALQVTDE
0211 EYERWQKEIG EITLPDHVFE LIFMLRQQLD KLPDAPYVSD RRWKKAIRLL QASAFFSGRS AVAPVDLILL
0281 KDCLWYDAQS LNLIQQQIDV LMTGHAWQQQ GMLTRLGAIV QRHLQLQQQQ SDKTALTVIR LGGIFSRRQQ
0351 YQLPVNVTAS TLTLLLQKPL KLHDMEVVHI SFERSALEQW LSKGGEIRGK LNGIGFAQKL NLEVDSAQHL
0421 VVRDVSLQGS TLALPGSSAE GLPGEIKQQL EELESDWRKQ HALFSEQQKC LFIPGDWLGR IEASLQDVGA
0491 QIRQAQQC
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aagaaaaata cccccccttt gagactattt
-070 tagccaccag caagaaacgt ctatactcgc aatttacgca gaacttttga cgaaaggacg ccacttcatt
0001 atggctcacc ctcatttatt agcggaaaga atttcccgcc tgagcagttc gttggaaaag gggctttatg
0071 aacgtagcca cgccatccgc ttgtgtttat tagcggcatt aagtggtgaa agtgtgttcc tccttggccc
0141 gccaggtatt gccaaaagtt tgatcgcccg gcgcttaaaa ttcgcctttc agaatgcccg cgcgtttgaa
0211 tatctgatga cccgcttctc cacgccggaa gaagtttttg gtcccctttc tattcaggcg ctaaaagatg
0281 aagggcgcta tgaacgttta accagcggtt acctgccgga agcagaaatt gtctttctgg atgagatctg
0351 gaaagcgggc ccggcaattc ttaatacctt gctcaccgcc attaacgagc gccagttccg caacggtgca
0421 cacgtagaaa aaatcccgat gcgtctgctg gtggcggcct ccaacgagct gccggaagca gacagcagtc
0491 tggaagcgtt atatgaccgc atgctgattc gtctgtggtt agataaagtg caggataaag cgaatttccg
0561 ctccatgctg accagtcaac aggatgaaaa cgacaatccg gttcctgatg ccttgcaggt cacagatgaa
0631 gaatatgaac gctggcagaa agagattggt gaaattacgc tgcccgatca tgtatttgag ctgattttta
0701 tgctgcgcca gcaactggat aaattaccgg atgcgcctta tgtctcggat cgtcgctgga aaaaagcgat
0771 ccgattattg caggccagcg ccttttttag cggtcgcagt gctgttgccc cggtagatct cattttgctg
0841 aaagattgcc tgtggtatga cgcgcaaagc ctgaatttga tacaacaaca aattgatgta ttgatgaccg
0911 gtcacgcctg gcaacagcaa gggatgttga ctcgccttgg cgcgattgtg caacgtcacc tgcaactcca
0981 gcagcaacaa agcgataaaa cagccttaac ggtaattcgt ctgggcggca ttttcagccg tcgtcagcag
1051 tatcaacttc ctgttaacgt tactgcttcc actctgactc tactgctgca aaaaccgtta aaactgcatg
1121 atatggaagt ggttcatatc tcctttgagc gtagcgcgct ggaacagtgg ctgagcaaag gtggtgaaat
1191 tcgcggtaaa ctgaacggta tcggctttgc ccagaaactg aatctggaag ttgatagcgc ccaacatctt
1261 gtcgttcgcg atgtaagttt acaaggcagt acgctggcac ttcccggttc atcggctgaa ggtctgcctg
1331 gtgaaataaa acaacaactg gaagagcttg aaagcgactg gcgcaagcaa cacgctttat tcagcgaaca
1401 gcaaaaatgt ctgtttatcc ctggcgactg gttaggtcgc attgaagcca gcctacagga tgtcggtgca
1471 cagattcgcc aggcacaaca atgctaacgc tggatacgct taatgtgatg ctggccgtca gcgaagaggg
1541 attgatcgaa gagatgatca tcgcactgct ggcctcaccg cagctggcgg tcttctt
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