|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCL07
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rpoZ
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rpoZ
Search strains by all related name:
rpoZ b3649 ECK3639 JW3624 o91 spoS
|
General information (Go to Linear View: )
|
|
Gene Name
|
rpoZ
|
|
Alternative name
|
b3649,ECK3639,JW3624,o91,spoS
|
|
Location, Length
|
3,820,129 - 3,820,404
(
+
)
;
82.34
min
;
276
(bp) ,
91
(aa)
|
|
Product
|
RNA polymerase, omega subunit
|
|
Operon Name
|
rpoZ-spoT-trmH-recG
|
|
Note
|
GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006350 - transcription
|
|
Function
|
enzyme; RNA synthesis, modification, DNA transcription
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( rpoZ )
GO:0003899
;
DNA-directed RNA polymerase activity ( rpoZ )
GO:0006350
;
transcription ( rpoZ )
GO:0006351
;
transcription, DNA-dependent ( rpoZ )
GO:0016740
;
transferase activity ( rpoZ )
GO:0016779
;
nucleotidyltransferase activity ( rpoZ )
|
|
PID
|
1790081
|
EC number
(KEGG Pathway)
|
2.7.7.6
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
rpoZ
(
EG10899
)
|
|
Number of removed
|
1 aa cleaved
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
RPOZ_ECOLI
(
P08374
)
|
|
- Protein name
|
DNA-directed RNA polymerase omega chain
|
|
- Synonyms
|
EC 2.7.7.6, RNAP omega subunit, Transcriptase omega chain, RNA polymerase omega subunit
|
|
- Gene name
|
t3777;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rpoZ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
DNA-directed RNA polymerase omega chain
|
|
PSI-BLAST
|
DNA-directed RNA polymerase omega chain
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
DNA-directed RNA polymerase omega subunit [Shigella flexneri 2a str. 301]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
|
MMBR References
|
J Bacteriol. 1989;171(3):1271-7.
rpoZ, encoding the omega subunit of Escherichia coli RNA polymerase, is in the same operon as spoT.
Gentry DR, Burgess RR.
(
2646273
)
|
J Bacteriol. 1991;173(21):6837-43.
Molecular organization and nucleotide sequence of the recG locus of Escherichia coli K-12.
Lloyd RG, Sharples GJ.
(
1938888
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MARVTVQDAV EKIGNRFDLV LVAARRARQM QVGGKDPLVP EENDKTTVIA LREIEEGLIN NQILDVRERQ
0071 EQQEQEAAEL QAVTAIAEGR R
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AAAGCAGCGT CATGACGCTT TAATCAGCAA
-070 ATTGTTGGCA GACTGAACCT GATTTCAGTA TCATGCCCAG TCATTTCTTC ACCTGTGGAG CTTTTTAAGT
0001 atggcacgcg taactgttca ggacgctgta gagaaaattg gtaaccgttt tgacctggta ctggtcgccg
0071 cgcgtcgcgc tcgtcagatg caggtaggcg gaaaggatcc gctggtaccg gaagaaaacg ataaaaccac
0141 tgtaatcgcg ctgcgcgaaa tcgaagaagg tctgatcaac aaccagatcc tcgacgttcg cgaacgccag
0211 gaacagcaag agcaggaagc cgctgaatta caagccgtta ccgctattgc tgaaggtcgt cgttaaTCAC
0281 AAAGCGGGTC GCCCTTGTAT CTGTTTGAAA GCCTGAATCA ACTGATTCAA ACCTACCTGC CGGAAGACCA
0351 AATCAAGCGT CTGCGGCAGG CGTATC
|
