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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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|
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Deletion
|
2-2
(LD)
,
OCL09,11-1 (LD 2-2'_CRS)
(D)
,
OCL09,11-2 (LD 2-2'_P/O)
(D)
,
OCL10
(D)
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|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
lyxK
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Related strains
|
|
Strains Search
|
Search strains by gene name:
lyxK
Search strains by all related name:
lyxK b3580 ECK3569 JW3552 lyx lyxK o498 xylK yiaP
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General information (Go to Linear View: )
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Gene Name
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lyxK
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|
Alternative name
|
b3580,ECK3569,JW3552,lyx,lyxK,o498,xylK,yiaP
|
|
Location, Length
|
3,745,107 - 3,746,603
(
+
)
;
80.72
min
;
1497
(bp) ,
498
(aa)
|
|
Product
|
L-xylulose kinase
|
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Operon Name
|
yiaKLMNO-lyxK-sgbHUE
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Note
|
L-xylulose kinase, cryptic; GO_process: GO:0016052 - carbohydrate catabolic process
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Function
|
enzyme; Degradation of small molecules: Carbon compounds
|
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Gene Ontology
|
GO:0005975
;
carbohydrate metabolic process ( lyx )
GO:0008744
;
L-xylulokinase activity ( lyx )
GO:0016301
;
kinase activity ( lyx )
GO:0016740
;
transferase activity ( lyx )
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PID
|
1790005
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EC number
(KEGG Pathway)
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2.7.1.53
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SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
LYXK_ECOLI
(
P37677
)
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|
- Protein name
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Cryptic L-xylulose kinase
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|
- Synonyms
|
EC 2.7.1.53, L-xylulokinase
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- Gene name
|
Name=lyx; Synonyms=lyxK, xylK, sgbK; OrderedLocusNames=b3580;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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lyxK
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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Chain O, Enterococcus Casseliflavus Glycerol Kinase
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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L-xylulose/3-keto-L-gulonate kinase
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PSI-BLAST
|
Glycerol kinase
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
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L-xylulose kinase [Escherichia coli K12]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
FGGY_KINASES_2
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MMBR References
|
Appl Environ Microbiol. 1984;47(1):15-21.
Cloning and sequencing of the xylose isomerase and xylulose kinase genes of Escherichia coli.
Lawlis VB, Dennis MS, Chen EY, Smith DH, Henner DJ.
(
6320721
)
|
J Biol Chem. 1994;269:29665-29669
Activation of a cryptic gene encoding a kinase for L-xylulose opens a new pathway for the utilization of L-lyxose by Escherichia coli.
Sanchez, J. C., R. Gimenez, A. Schneider, W. D. Fessner, L. Baldoma, J. Aguilar, and J. Badia.
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| Sequences |
Amino acid
FASTA format
|
0001 MTQYWLGLDC GGSWLKAGLY DREGREAGVQ RLPLCALSPQ PGWAERDMAE LWQCCMAVIR ALLTHSGVSG
0071 EQIVGIGISA QGKGLFLLDK NDKPLGNAIL SSDRRAMEIV RRWQEDGIPE KLYPLTRQTL WTGHPVSLLR
0141 WLKEHEPERY AQIGCVMMTH DYLRWCLTGV KGCEESNISE SNLYNMSLGE YDPCLTDWLG IAEINHALPP
0211 VVGSAEICGE ITAQTAALTG LKAGTPVVGG LFDVVSTALC AGIEDEFTLN AVMGTWAVTS GITRGLRDGE
0281 AHPYVYGRYV NDGEFIVHEA SPTSSGNLEW FTAQWGEISF DEINQAVASL PKAGGDLFFL PFLYGSNAGL
0351 EMTSGFYGMQ AIHTRAHLLQ AIYEGVVFSH MTHLNRMRER FTDVHTLRVT GGPAHSDVWM QMLADVSGLR
0421 IELPQVEETG CFGAALAARV GTGVYHNFSE AQRDLRHPVR TLLPDMTAHQ LYQKKYQRYQ HLIAALQGFH
0491 ARIKEHTL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CTTTAGCGAC GCACTGGGGA ATCAGGTTCG
-070 CGACATGTTT GTTAAAGATG TGCCGCAGGG AGCTGATCTG CTGAAAGCCG TGGATGAGGT GCAATAAACC
0001 atgacgcaat actggctggg gttagattgt ggcggtagct ggctgaaagc cgggctgtat gaccgcgaag
0071 gccgggaggc aggcgtgcag cgcctgccgc tgtgcgcatt aagcccgcag ccaggctggg cagagcgcga
0141 tatggcagaa ctgtggcaat gctgcatggc tgtcattcgc gccctgctta ctcattctgg tgttagcggg
0211 gaacaaattg tcggtatcgg catctccgca cagggaaagg gcttgttttt gctggataaa aacgacaaac
0281 cgctcgggaa tgctattttg tcctcggacc gccgggcgat ggaaatcgtt cgtcgctggc aggaagatgg
0351 catcccggaa aaactctacc cgctgacccg acaaaccttg tggaccgggc atccggtgtc gctgttacgc
0421 tggctgaaag agcacgaacc agaacgctac gcgcaaattg gctgcgtgat gatgacgcac gactacctgc
0491 gctggtgttt aactggcgtc aaaggctgtg aagagagcaa tatttccgag tccaacctct acaacatgag
0561 tcttggggaa tatgacccgt gcctcaccga ctggctgggg atcgctgaaa tcaatcacgc cctgccgcct
0631 gttgtcggat ctgccgaaat ctgcggggag atcaccgctc agacagccgc cctgaccggt ctgaaagcgg
0701 gtacgcccgt tgttggcggc ctgtttgatg tggtttccac cgcactctgc gccgggatcg aagacgaatt
0771 taccctcaat gcggtgatgg ggacctgggc ggtgaccagc ggcataaccc gcggtttacg tgacggtgaa
0841 gcgcatccgt atgtctatgg tcgctacgtt aacgatggtg aatttatcgt tcacgaagcc agccctacct
0911 cttccggcaa cctcgaatgg tttaccgcac agtggggaga aatctcgttt gatgagatca atcaggccgt
0981 tgccagcttg ccgaaggctg ggggcgatct ctttttcctg ccgttcctgt acggcagcaa cgccggactc
1051 gagatgacca gtggtttcta cgggatgcag gccattcaca cccgcgcgca cctgttgcag gccatctatg
1121 aaggggtggt gttcagccat atgacccacc tcaaccgaat gcgcgaacgt tttactgatg ttcacaccct
1191 acgcgtcact ggcggcccgg cgcactccga tgtctggatg caaatgctgg cggacgtcag cggtctgcgt
1261 atcgagctgc cgcaggtgga agaaaccggc tgctttggtg cggcccttgc cgcccgcgtc ggcaccgggg
1331 tttatcacaa cttcagcgaa gcccaacgtg acttgcgaca cccggtgcgc accctgctgc cagatatgac
1401 cgcccatcag ctttaccaaa aaaaatatca acgttatcag catctcattg ccgcacttca gggctttcac
1471 gcccgcatta aggagcacac attatgaGCC GACCACTTCT GCAACTGGCC CTCGACCACT CATCACTTGA
1541 AGCCGCGCAG CGCGACGTGA CGCTGTTAAA AGACAGCGTC GATATCGTCG AAGCGGG
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