|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
2-2
(LD)
,
OCL09,11-1 (LD 2-2'_CRS)
(D)
,
OCL09,11-2 (LD 2-2'_P/O)
(D)
,
OCL10
(D)
,
OCL11
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
xylH
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
xylH
Search strains by all related name:
xylH b3568 ECK3557 JW3540 o393
|
General information (Go to Linear View: )
|
|
Gene Name
|
xylH
|
|
Alternative name
|
b3568,ECK3557,JW3540,o393
|
|
Location, Length
|
3,731,743 - 3,732,924
(
+
)
;
80.43
min
;
1182
(bp) ,
393
(aa)
|
|
Product
|
D-xylose ABC transporter permease subunit
|
|
Operon Name
|
xylFGHR
|
|
Note
|
putative xylose transport, membrane component; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( xylH )
GO:0005351
;
sugar:hydrogen ion symporter activity ( xylH )
GO:0005886
;
plasma membrane ( xylH )
GO:0006810
;
transport ( xylH )
GO:0008643
;
carbohydrate transport ( xylH )
GO:0016020
;
membrane ( xylH )
GO:0016021
;
integral to membrane ( xylH )
|
|
PID
|
1789992
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
XYLH_ECOLI
(
P37389
)
|
|
- Protein name
|
Xylose transport system permease protein xylH.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b3568, c4388, z4993, ECs4451, SF3612, S4157;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
xylH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Xylose transport system permease protein xylH
|
|
PSI-BLAST
|
Xylose transport system permease protein xylH
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative xylose transport, membrane component [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
|
MMBR References
|
Nucleic Acids Res. 1994;22:2576-2586
Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes.
Sofia, H. J., V. D. Burland, D. L. Daniels, G. Plunkett, and F. R. Blattner.
|
| Sequences |
Amino acid
FASTA format
|
0001 MSKSNPSEVK LAVPTSGGFS GLKSLNLQVF VMIAAIIAIM LFFTWTTDGA YLSARNVSNL LRQTAITGIL
0071 AVGMVFVIIS AEIDLSVGSM MGLLGGVAAI CDVWLGWPLP LTIIVTLVLG LLLGAWNGWW VAYRKVPSFI
0141 VTLAGMLAFR GILIGITNGT TVSPTSAAMS QIGQSYLPAS TGFIIGALGL MAFVGWQWRG RMRRQALGLQ
0211 SPASTAVVGR QALTAIIVLG AIWLLNDYRG VPTPVLLLTL LLLGGMFMAT RTAFGRRIYA IGGNLEAARL
0281 SGINVERTKL AVFAINGLMV AIAGLILSSR LGAGSPSAGN IAELDAIAAC VIGGTSLAGG VGSVAGAVMG
0351 AFIMASLDNG MSMMDVPTFW QYIVKGAILL LAVWMDSATK RRS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGTGTACTGG TGATGCATGA AGGGAAACTA
-070 AAAGCCAACC TGATAAATCA TAACCTGACT CAGGAGCAGG TGATGGAAGC CGCATTGAGG AGCGAACATC
0001 atgtcgaaaa gcaatccgtc tgaagtgaaa ttggccgtac cgacatccgg tggcttctcc gggctgaaat
0071 cactgaattt gcaggtcttc gtgatgattg cagctatcat cgcaatcatg ctgttcttta cctggaccac
0141 cgatggtgcc tacttaagcg cccgtaacgt ctccaacctg ttacgccaga ccgcgattac cggcatcctc
0211 gcggtaggaa tggtgttcgt cataatttct gctgaaatcg acctttccgt cggctcaatg atggggctgt
0281 taggtggcgt cgcggcgatt tgtgacgtct ggttaggctg gcctttgcca cttaccatca ttgtgacgct
0351 ggttctggga ctgcttctcg gtgcctggaa cggatggtgg gtcgcgtacc gtaaagtccc ttcatttatt
0421 gtcaccctcg cgggcatgtt ggcatttcgc ggcatactca ttggcatcac caacggcacg actgtatccc
0491 ccaccagcgc cgcgatgtca caaattgggc aaagctatct ccccgccagt accggcttca tcattggcgc
0561 gcttggctta atggcttttg ttggttggca atggcgcgga agaatgcgcc gtcaggcttt gggtttacag
0631 tctccggcct ctaccgcagt agtcggtcgc caggctttaa ccgctatcat cgtattaggc gcaatctggc
0701 tgttgaatga ttaccgtggc gttcccactc ctgttctgct gctgacgttg ctgttactcg gcggaatgtt
0771 tatggcaacg cggacggcat ttggacgacg catttatgcc atcggcggca atctggaagc agcacgtctc
0841 tccgggatta acgttgaacg caccaaactt gccgtgttcg cgattaacgg attaatggta gccatcgccg
0911 gattaatcct tagttctcga cttggcgctg gttcaccttc tgcgggaaat atcgccgaac tggacgcaat
0981 tgcagcatgc gtgattggcg gcaccagcct ggctggcggt gtgggaagcg ttgccggagc agtaatgggg
1051 gcatttatca tggcttcact ggataacggc atgagtatga tggatgtacc gaccttctgg cagtatatcg
1121 ttaaaggtgc gattctgttg ctggcagtat ggatggactc cgcaaccaaa cgccgttctt gaTTTTGATA
1191 AAAATTTTCT CAAAGCCGGT TACGTATTAC CGGTTTTGAG TTTTTGCATG ATTCAGCAGG AAAAGAACCA
1261 TGTTTACTAA ACGTCACCGC AT
|
