|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
2-2
(LD)
,
OCL09,11-1 (LD 2-2'_CRS)
(D)
,
OCL09,11-2 (LD 2-2'_P/O)
(D)
,
OCL10
(D)
,
OCL11
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
xylF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
xylF
Search strains by all related name:
xylF b3566 ECK3555 JW3538 o330 xylT
|
General information (Go to Linear View: )
|
|
Gene Name
|
xylF
|
|
Alternative name
|
b3566,ECK3555,JW3538,o330,xylT
|
|
Location, Length
|
3,729,154 - 3,730,146
(
+
)
;
80.38
min
;
993
(bp) ,
330
(aa)
|
|
Product
|
D-xylose transporter subunit
|
|
Operon Name
|
xylFGHR
|
|
Note
|
xylose binding protein transport system; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0016052 - carbohydrate catabolic process
|
|
Function
|
transport; Transport of small molecules: Carbohydrates, organic acids, alcohols
|
|
Gene Ontology
|
GO:0005351
;
sugar:hydrogen ion symporter activity ( xylF )
GO:0006810
;
transport ( xylF )
GO:0008643
;
carbohydrate transport ( xylF )
GO:0042597
;
periplasmic space ( xylF )
|
|
PID
|
1789990
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
xylF
(
EG20252
)
|
|
Number of removed
|
23 aa cleaved
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
XYLF_ECOLI
(
P37387
)
|
|
- Protein name
|
D-xylose-binding periplasmic protein precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=xylF; Synonyms=xylT; OrderedLocusNames=b3566;
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Homology Analysis
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BLAST
|
|
Bacteria
|
|
GTOP
|
xylF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Structural Studies On The Apo Transcription Factor Form B. Megaterium
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
D-xylose-binding periplasmic protein precursor
|
|
PSI-BLAST
|
HTH-type transcriptional repressor purR
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
D-xylose transporter subunit [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
|
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PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
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MMBR References
|
Agric. Biol. Chem. 1987;51:2575-2578.
Cloning of the D-xylose uptake gene linked to the xylA gene in Escherichia coli.
Kurose, N., K. Murata, and A. Kimura.
|
Mol Gen Genet. 1984;194(3):410-5.
Cloning and characterization of the xyl genes from Escherichia coli.
Rosenfeld SA, Stevis PE, Ho NW.
(
6330500
)
|
Nucleic Acids Res. 1994;22:2576-2586
Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes.
Sofia, H. J., V. D. Burland, D. L. Daniels, G. Plunkett, and F. R. Blattner.
|
Receptors Channels. 1995;3(2):117-28.
Molecular genetics of a receptor protein for D-xylose, encoded by the gene xylF, in Escherichia coli.
Sumiya M, Davis EO, Packman LC, McDonald TP, Henderson PJ.
(
8581399
)
|
J Biol Chem. 1984;259:1520-1525
Location of a structural gene for xylose-H+ symport at 91 min. on the linkage map of Escherichia coli.
Davis, E. O., M. C. Jones-Mortimer, and P. J. F. Henderson.
|
| Sequences |
Amino acid
FASTA format
|
0001 MKIKNILLTL CTSLLLTNVA AHAKEVKIGM AIDDLRLERW QKDRDIFVKK AESLGAKVFV QSANGNEETQ
0071 MSQIENMINR GVDVLVIIPY NGQVLSNVVK EAKQEGIKVL AYDRMINDAD IDFYISFDNE KVGELQAKAL
0141 VDIVPQGNYF LMGGSPVDNN AKLFRAGQMK VLKPYVDSGK IKVVGDQWVD GWLPENALKI MENALTANNN
0211 KIDAVVASND ATAGGAIQAL SAQGLSGKVA ISGQDADLAG IKRIAAGTQT MTVYKPITLL ANTAAEIAVE
0281 LGNGQEPKAD TTLNNGLKDV PSRLLTPIDV NKNNIKDTVI KDGFHKESEL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTAATTGTTT TCCCCTGTTT AGTTGCTAAA
-070 AATTGGTTAC GTTTATCGCG GTGATTGTTA CTTATTAAAA CTGTCCTCTA ACTACAGAAG GCCCTACACC
0001 atgaaaataa agaacattct actcaccctt tgcacctcac tcctgcttac caacgttgct gcacacgcca
0071 aagaagtcaa aataggtatg gcgattgatg atctccgtct tgaacgctgg caaaaagatc gagatatctt
0141 tgtgaaaaag gcagaatctc tcggcgcgaa agtatttgta cagtctgcaa atggcaatga agaaacacaa
0211 atgtcgcaga ttgaaaacat gataaaccgg ggtgtcgatg ttcttgtcat tattccgtat aacggtcagg
0281 tattaagtaa cgttgtaaaa gaagccaaac aagaaggcat taaagtatta gcttacgacc gtatgattaa
0351 cgatgcggat atcgattttt atatttcttt cgataacgaa aaagtcggtg aactgcaggc aaaagccctg
0421 gtcgatattg ttccgcaagg taattacttc ctgatgggcg gctcgccggt agataacaac gccaagctgt
0491 tccgcgccgg acaaatgaaa gtgttaaaac cttacgttga ttccggaaaa attaaagtcg ttggtgacca
0561 atgggttgat ggctggttac cggaaaacgc attgaaaatt atggaaaacg cgctaaccgc caataataac
0631 aaaattgatg ctgtagttgc ctcaaacgat gccaccgcag gtggggcaat tcaggcatta agcgcgcaag
0701 gtttatcagg gaaagtagca atctccggcc aggatgcgga tctcgcaggt attaaacgta ttgctgccgg
0771 tacgcaaact atgacggtgt ataaacctat tacgttgttg gcaaatactg ccgcagaaat tgccgttgag
0841 ttgggcaatg gtcaggaacc aaaagcagat accacactga ataatggcct gaaagatgtc ccctcccgcc
0911 tcctgacacc gatcgatgtg aataaaaaca acatcaaaga tacggtaatt aaagacggat tccacaaaga
0981 gagcgagctg taaGCGTTAC GCCCCAGCGC GGAGCGGGGG CGTGATTTCT CTCCATGCCG CGTGAATGAA
1051 TTGGCTTAGG TGGAGTCGTT ATGCCTTATC TACTTGAAAT GAA
|
