|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL18
(D)
,
OCL18-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yhhZ
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yhhZ
Search strains by all related name:
yhhZ b3442 ECK3428 JW3406 o392
|
General information (Go to Linear View: )
|
|
Gene Name
|
yhhZ
|
|
Alternative name
|
b3442,ECK3428,JW3406,o392
|
|
Location, Length
|
3,579,886 - 3,581,064
(
+
)
;
77.16
min
;
1179
(bp) ,
392
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
yhhZ-yrhA-insA-6AB-6B-6
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0003676
;
nucleic acid binding ( yhhZ )
GO:0004519
;
endonuclease activity ( yhhZ )
|
|
PID
|
1789850
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YHHZ_ECOLI
(
P46855
)
|
|
- Protein name
|
Hypothetical protein yhhZ.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yhhZ; OrderedLocusNames=b3442;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yhhZ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yhhZ
|
|
PSI-BLAST
|
Hypothetical protein yhhZ
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b3442 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
J Mol Biol. 1997;266(3):525-37.
Recombinase binding specificity at the chromosome dimer resolution site dif of Escherichia coli.
Hayes F, Sherratt DJ.
(
9067608
)
|
Genes Dev. 1996;10:1162-1171
Use of a transposon (Tndif) to obtain suppressing and nonsuppressing insertions of the dif resolvase site of Escherichia coli.
Kuempel, P., A. Hogaard, M. Nielsen, O. Nagappan, and M. Tecklenburg.
|
New Biol. 1991;3(8):799-811.
dif, a recA-independent recombination site in the terminus region of the chromosome of Escherichia coli.
Kuempel PL, Henson JM, Dircks L, Tecklenburg M, Lim DF.
(
1657123
)
|
Genes Dev. 1996;10:762-773
Determinants of selectivity in Xer site-specific recombination.
Blakely, G., and D. Sherratt.
|
New Biol. 1991;3(8):789-98.
Escherichia coli XerC recombinase is required for chromosomal segregation at cell division.
Blakely G, Colloms S, May G, Burke M, Sherratt D.
(
1931824
)
|
Proc Natl Acad Sci U S A. 1995;92:1352-1356
The dif resolvase locus of the Escherichia coli chromosome can be replaced by a 33-bp sequence, but function depends on location.
Tecklenburg, M., A. Naumer, O. Nagappan, and P. Kuempel.
|
J Bacteriol. 1994;176:3188-3195
Plasmid pSC101 harbors a recombination site, psi, which is able to resolve plasmid multimers and to substitute for the analogous chromosomal Escherichia coli site dif.
Cornet, F., I. Mortier, J. C. Patte, and J. M. Louarn.
|
Genes Dev. 1996;10:1152-1161
Restriction of the activity of the recombination site dif to a small zone of the Escherichia coli chromosome.
Cornet, F., J. Louarn, J. Patte, and J. M. Louarn.
|
| Sequences |
Amino acid
FASTA format
|
0001 MSNIVYLTVT GEQQGSISAG CGTSESTGNR WQSGHEDEIF TFSLLNNINN TGLGSQFHGI TFCKLIDKST
0071 PLFINSINNN EQLFMGFDFY RINRFGRLEK YYYIQLRGAF LSAIHHQIIE NQLDTETITI SYEFILCQHL
0141 IANTEFSYLA LPENYNRLFL PNSKNQTNNR FKTLNSKAIG RLLAAGGVYN GNIEGFRDTA EKLGGDAIKG
0211 YDQILNEKTA GIAIATASIL LTKRSNVDTY TEINSYLGKL RGQQKLLDGI DIIEIIYIKR PSKDLANLRK
0281 EFNKTVRKNF LIKLAKTSEA SGRFNAEDLL RMRKGNVPLN YNVHHKLSLD DGGTNDFENL VLIENEPYHK
0351 VFTNMQSRIA KGILVGESKI TPWAIPSGSI YPPMKNIMDH TK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TAATATATAC GCCTACAATT TCCTGGAGTA
-070 AATAAATAAC AATTAACAAG CATAATATTG CCATTGATAA AATAGCATGC CATAAAAGGA CTTTTCAGGG
0001 atgagtaata ttgtttacct gacagtaacg ggagaacaac aaggaagcat ctccgcaggt tgtgggactt
0071 ctgagtctac aggtaatcgt tggcagagcg ggcatgagga tgaaatattt acattctcac tcttaaataa
0141 tattaataat acggggcttg gttcacagtt ccatggtata acattttgta aattaattga taaaagcact
0211 ccattattta ttaattccat taacaataat gaacaattat ttatgggatt tgacttctat cgaataaata
0281 gatttggtag attggaaaag tattattata tacaactaag aggcgctttt ttatcggcta ttcatcacca
0351 gatcattgaa aaccaactgg atacagaaac aataactatt agttatgaat ttatcctctg tcaacatctt
0421 atcgcaaata ccgagttcag ctatttggca ctccctgaaa attataaccg tttgttttta ccaaattcaa
0491 aaaaccaaac aaataatcgt ttcaaaacgt taaacagcaa agctattggc aggctacttg ctgctggtgg
0561 cgtatacaat gggaacattg aaggattcag agatactgcg gaaaaactgg gtggagatgc aataaaaggc
0631 tatgatcaaa tactaaatga aaaaacagcg ggcatagcga tagcaacagc atctattctt ttaacaaagc
0701 gttctaatgt tgatacatat acagaaataa atagttactt aggcaaactt agaggtcaac aaaaacttct
0771 tgatggtata gacataatag aaataatata cattaagaga ccttcaaaag acttagctaa cttacgaaag
0841 gagtttaata aaactgtaag aaaaaatttt cttatcaaac ttgcaaaaac ctccgaagca tctggaagat
0911 tcaacgccga agacctttta agaatgagaa agggcaatgt tcctctaaat tataatgttc accataaact
0981 atctctagat gatggtggta ctaatgattt cgaaaattta gtattaatcg aaaacgaacc atatcataaa
1051 gtttttacta acatgcaatc acgaatagct aagggaatat tagtaggtga aagcaaaatc actccctggg
1121 ccattccatc tggctcaatt tatcctccca tgaaaaatat tatggaccac acaaaatgaT GACTAAAACC
1191 CAAATAAATA AATTAATAAA AATGATGAAT GATTTAGACT ATCCATTTGA AGCACCGCTC AAGGAATCAT
1261 TTATTGAAAG TATAATCCA
|
