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PEC Original Annotations
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Essentiality
|
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Class
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non-essential
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References (PMID)
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Deletion
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9-1
(LD)
,
DE(gpt-lac)5
,
DE(argF-lac)169
,
OCR36,37-6 (LD 9C::Ap)
(D)
|
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
cynR
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Related strains
|
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Strains Search
|
Search strains by gene name:
cynR
Search strains by all related name:
cynR b0338 ECK0335 JW5894
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General information (Go to Linear View: )
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Gene Name
|
cynR
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Alternative name
|
b0338,ECK0335,JW5894
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Location, Length
|
357,015 - 357,914
(
-
)
;
7.69
min
;
900
(bp) ,
299
(aa)
|
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Product
|
transcriptional activator of cyn operon; autorepressor
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Operon Name
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cynR
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Note
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cyn operon positive regulator; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0016563 - transcription activator activity; GO_function: GO:0016564 - transcription repressor activity; GO_process: GO:0006350 - transcription; GO_process: GO:0006805 - xenobiotic metabolic process
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Function
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regulator; Central intermediary metabolism: Pool, multipurpose conversions
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Gene Ontology
|
GO:0003677
;
DNA binding ( cynR )
GO:0003700
;
transcription factor activity ( cynR )
GO:0005737
;
cytoplasm ( cynR )
GO:0006350
;
transcription ( cynR )
GO:0006355
;
regulation of transcription, DNA-dependent ( cynR )
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PID
|
157672245
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
[
1
more]
)
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Entry name(Acc.no)
|
CYNR_ECOLI
(
P27111
)
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|
- Protein name
|
HTH-type transcriptional regulator cynR
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- Synonyms
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Cyn operon transcriptional activator
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- Gene name
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Name=cynR; OrderedLocusNames=b0338;
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MMBR References
|
FEMS Microbiol Rev. 1990;7(3-4):247-52.
The cyanase operon and cyanate metabolism.
Anderson PM, Sung YC, Fuchs JA.
(
2094285
)
|
J Bacteriol. 1993;175:7990-7999
Expression and purification of the cynR regulatory gene product: CynR is a DNA-binding protein.
Lamblin, A. F., and J. A. Fuchs.
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J Bacteriol. 1992;174:3645-3650
The Escherichia coli K-12 cyn operon is positively regulated by a member of the lysR family.
Sung, Y.-C., and J. A. Fuchs.
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| Sequences |
Amino acid
FASTA format
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0001 MLSRHINYFL AVAEHGSFTR AASALHVSQP ALSQQIRQLE ESLGVPLFDR SGRTIRLTDA GEVWRQYASR
0071 ALQELGAGKR AIHDVADLTR GSLRIAVTPT FTSYFIGPLM ADFYARYPSI TLQLQEMSQE KIEDMLCRDE
0141 LDVGIAFAPV HSPELEAIPL LTESLALVVA QHHPLAVHEQ VALSRLHDEK LVLLSAEFAT REQIDHYCEK
0211 AGLHPQVVIE ANSISAVLEL IRRTSLSTLL PAAIATQHDG LKAISLAPPL LERTAVLLRR KNSWQTAAAK
0281 AFLHMALDKC AVVGGNESR
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tctgtctgtc tctggaatga gaggcagact
-070 actcgccgat tgtcataagg taaaagtctc atttatgatg agttccattg gatttactta taggttgcga
0001 atgctctctc gacatatcaa ttattttctt gccgtggctg aacatggcag cttcacccgt gccgccagtg
0071 cgttgcacgt ctcccaacct gcgctttccc agcagattcg ccagttagag gagagtttag gcgtgccgct
0141 gtttgaccgt agcgggcgaa cgattcgtct cactgatgca ggagaagtct ggcgacagta cgccagccgg
0211 gcgttacagg aactgggggc gggtaaacgg gcgattcatg atgttgccga tctgacgcga ggatcgctgc
0281 gtatcgccgt cacccccacc tttacgagct actttatcgg ccccttaatg gcggatttct atgcgcgcta
0351 tcccagcatc acgctccagc tacaggaaat gtcgcaggag aaaatcgagg atatgctttg ccgcgacgag
0421 ttggacgttg ggattgcctt cgcgcctgtg cattcgccgg agctggaggc aattccttta ctgacagaaa
0491 gtttagcgtt agtcgtggcg caacatcatc cgctggccgt ccatgaacag gtggcgttga gtcgcttgca
0561 tgatgaaaaa ctggtcctgc tcagcgcgga atttgccacc agagagcaaa ttgaccacta ctgcgagaaa
0631 gcggggctac atccacaggt ggtcattgag gcgaactcaa ttagcgcggt tctggagctg attcgccgca
0701 cttccctttc cacattgtta ccagcagcga ttgccacaca acatgacggg cttaaagcta tttctcttgc
0771 cccgccacta ctggagagaa cggcggtttt gttgcggcgg aaaaatagct ggcagacagc cgccgcgaag
0841 gcatttttgc acatggcgtt ggataaatgc gcggttgttg gcggaaatga atcacggtag ccgctgacac
0911 aggtctgcgg ctggaattgc ctgatgcgct acgcttatca ggcctacgag ttcagtgctc tacgtaggcc
0981 ggataaggcg ttcacgccgc
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