|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCL19,20-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
gph
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
gph
Search strains by all related name:
gph b3385 ECK3372 JW3348 yhfE
|
General information (Go to Linear View: )
|
|
Gene Name
|
gph
|
|
Alternative name
|
b3385,ECK3372,JW3348,yhfE
|
|
Location, Length
|
3,511,653 - 3,512,411
(
-
)
;
75.69
min
;
759
(bp) ,
252
(aa)
|
|
Product
|
phosphoglycolate phosphatase
|
|
Operon Name
|
aroKB-damX-dam-rpe-gph-trpS
|
|
Note
|
GO_process: GO:0016052 - carbohydrate catabolic process
|
|
Function
|
enzyme; Degradation of small molecules: Carbon compounds
|
|
Gene Ontology
|
GO:0000287
;
magnesium ion binding ( gph )
GO:0003824
;
catalytic activity ( gph )
GO:0005975
;
carbohydrate metabolic process ( gph )
GO:0008152
;
metabolic process ( gph )
GO:0008967
;
phosphoglycolate phosphatase activity ( gph )
GO:0016787
;
hydrolase activity ( gph )
GO:0031404
;
chloride ion binding ( gph )
|
|
PID
|
1789787
|
EC number
(KEGG Pathway)
|
3.1.3.18
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
GPH_ECOLI
(
P32662
)
|
|
- Protein name
|
Phosphoglycolate phosphatase
|
|
- Synonyms
|
EC 3.1.3.18, PGP
|
|
- Gene name
|
Name=gph; OrderedLocusNames=b3385;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
gph
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Novel Predicted Phosphatase From Haemophilus Somnus 129pt At 1.90 A Resolution
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Phosphoglycolate phosphatase
|
|
PSI-BLAST
|
Phosphoglycolate phosphatase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
phosphoglycolate phosphatase [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
|
|
MMBR References
|
Mol Gen Genet. 1995;247(5):546-54.
Characterization of three genes in the dam-containing operon of Escherichia coli.
Lyngstadaas A, Lobner-Olesen A, Boye E.
(
7603433
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MNKFEDIRGV AFDLDGTLVD SAPGLAAAVD MALYALELPV AGEERVITWI GNGADVLMER ALTWARQERA
0071 TQRKTMGKPP VDDDIPAEEQ VRILRKLFDR YYGEVAEEGT FLFPHVADTL GALQAKGLPL GLVTNKPTPF
0141 VAPLLEALDI AKYFSVVIGG DDVQNKKPHP DPLLLVAERM GIAPQQMLFV GDSRNDIQAA KAAGCPSVGL
0211 TYGYNYGEAI DLSQPDVIYQ SINDLLPALG LPHSENQESK ND
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gcgggcgcgg atatgttcgt cgccggttcg
-070 gcaatcttcg accagccaga ctacaaaaaa gtcattgatg aaatgcgcag tgaactggca aaggtaagtc
0001 atgaataagt ttgaagatat tcgcggcgtc gcttttgatc ttgatggtac gctggtcgac agtgctcctg
0071 gtcttgctgc tgcggtagat atggcgctgt atgcgctgga gttgcccgtc gcaggtgaag aacgcgttat
0141 tacctggatt ggtaacggcg cagatgttct gatggagcgc gcattgacct gggcgcgtca ggaacgtgcg
0211 actcagcgta aaacaatggg taaaccgccc gttgatgacg acattccggc agaagaacag gtacgtattc
0281 tgcgtaaact gttcgatcgc tactatggcg aggttgccga agaggggacg tttttgttcc cgcacgttgc
0351 cgatacgttg ggcgcgttgc aggctaaagg cctgccgcta ggcctggtca ccaacaaacc gacgccgttc
0421 gtcgcgccgc tgctcgaagc cttagatatc gccaaatact tcagcgtggt gattggtggt gatgatgtgc
0491 aaaacaaaaa accgcatccg gacccgctgt tactggtggc tgagcggatg ggaattgccc cacaacagat
0561 gctgtttgtc ggcgactcac gcaatgatat tcaggcggca aaagcggcag gttgcccatc agttggctta
0631 acctacggat ataactacgg cgaggctatc gatctcagcc agcctgatgt aatttatcag tctataaatg
0701 accttctgcc cgcattaggg cttccgcata gcgaaaatca ggaatcgaaa aatgactaag cccatcgttt
0771 ttagtggcgc acagccctca ggtgaattga ccattggtaa ctacatgggt gcgctgcgtc agtgggtaaa
0841 catgcaggat gactaccat
|
