|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCL20
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
nirC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
nirC
Search strains by all related name:
nirC b3367 ECK3355 JW3330 o184
|
General information (Go to Linear View: )
|
|
Gene Name
|
nirC
|
|
Alternative name
|
b3367,ECK3355,JW3330,o184
|
|
Location, Length
|
3,495,025 - 3,495,831
(
+
)
;
75.33
min
;
807
(bp) ,
268
(aa)
|
|
Product
|
nitrite transporter
|
|
Operon Name
|
nirBDC-cysG
|
|
Note
|
nitrite reductase activity; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006807 - nitrogen compound metabolic process
|
|
Function
|
enzyme; Energy metabolism, carbon: Anaerobic respiration
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( nirC )
GO:0005886
;
plasma membrane ( nirC )
GO:0006810
;
transport ( nirC )
GO:0016020
;
membrane ( nirC )
GO:0016021
;
integral to membrane ( nirC )
GO:0042128
;
nitrate assimilation ( nirC )
|
|
PID
|
87082249
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
NIRC_ECOLI
(
P11097
;
P78112
)
|
|
- Protein name
|
Potential nitrite transporter.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=nirC; OrderedLocusNames=b3367, SF3386, S4377;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
nirC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain , Dihydrofolate Reductase (E.C.1.5.1.3)
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Probable nitrite transporter
|
|
PSI-BLAST
|
Probable nitrite transporter
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
COG2116: Formate/nitrite family of transporters [Escherichia coli E24377A]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
FORMATE_NITRITE_TP_1
FORMATE_NITRITE_TP_2
|
|
MMBR References
|
Mol Microbiol. 1992;6(19):2805-13.
Transcriptional control, translation and function of the products of the five open reading frames of the Escherichia coli nir operon.
Harborne NR, Griffiths L, Busby SJ, Cole JA.
(
1435259
)
|
Eur J Biochem. 1990;191:315-323
Nucleotide sequence, organisation and structural analysis of the products of genes in the nirB-cysG region of the Escherichia coli K-12 chromosome.
Peakman, T. C., J. Crouzet, J.-F. Mayaux, S. J. Busby, S. Mohan, N. Harborne, J. C. Wootton, R. Nicolson, and J. A. Cole.
|
| Sequences |
Amino acid
FASTA format
|
0001 MFTDTINKCA ANAARIARLS ANNPLGFWVS SAMAGAYVGL GIILIFTLGN LLDPSVRPLV MGATFGIALT
0071 LVIIAGSELF TGHTMFLTFG VKAGSISHGQ MWAILPQTWL GNLVGSVFVA MLYSWGGGSL LPVDTSIVHS
0141 VALAKTTAPA MVLFFKGALC NWLVCLAIWM ALRTEGAAKF IAIWWCLLAF IASGYEHSIA NMTLFALSWF
0211 GNHSEAYTLA GIGHNLLWVT LGNTLSGAVF MGLGYWYATP KANRPVADKF NQTETAAG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CCCCTTTTTG CATGGTCCTG TAATAATCTT
-070 CGGTATATTG CAGGACATTT TTTAAACTTT TTGTTTTATT TTTTGTTTTT ATTTTTTAAA GGATAATCAA
0001 atgtttacag acactattaa taagtgtgcg gctaacgctg cgcgcattgc acgcctgtcg gcaaataacc
0071 cgctcggctt ttgggtcagc tccgccatgg cgggcgcgta tgtgggtctt gggatcatcc tgattttcac
0141 gctcggtaat ttgctcgatc catccgtacg ccctttggtg atgggcgcga cctttggtat cgccttaacg
0211 ctggtgatta tcgccggttc tgaactgttc accggacaca ccatgttcct cacctttggg gtaaaagcgg
0281 gcagcatcag ccacgggcaa atgtgggcaa tcctgccgca aacctggctg ggtaacctgg tcggttccgt
0351 cttcgttgcc atgctctata gctggggcgg cggtagcctg ctgccggtag ataccagcat cgttcactcc
0421 gtcgcgctgg ctaaaaccac tgcaccggca atggtactct tcttcaaagg tgcattgtgt aactggctgg
0491 tttgcctggc aatctggatg gcgctgcgca ctgaaggggc ggcgaaattt atcgctatct ggtggtgtct
0561 gctggcattt atcgcgtccg gctacgagca ctctatcgct aacatgacgc tgttcgcgct ctcctggttc
0631 ggcaaccaca gcgaagccta cacgctggcg ggtattggtc ataacctgct gtgggtgacg ctgggtaata
0701 ctttatcagg tgccgtattc atgggattgg gttattggta tgctacgccg aaagcgaatc gtccggttgc
0771 ggacaaattt aatcaaactg aaacggctgc cggttaaTTA CTAAGGGGTT TTTACGTGGA TCATTTGCCT
0841 ATATTTTGCC AATTACGCGA TCGCGACTGT CTGATTGTCG GCGGTGGTGA TGTCGCGGAA CGCAAAG
|
