|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCL20
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
nirD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
nirD
Search strains by all related name:
nirD b3366 ECK3354 JW3329 o108
|
General information (Go to Linear View: )
|
|
Gene Name
|
nirD
|
|
Alternative name
|
b3366,ECK3354,JW3329,o108
|
|
Location, Length
|
3,494,573 - 3,494,899
(
+
)
;
75.32
min
;
327
(bp) ,
108
(aa)
|
|
Product
|
nitrite reductase, NAD(P)H-binding, small subunit
|
|
Operon Name
|
nirBDC-cysG
|
|
Note
|
nitrite reductase (NAD(P)H) subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009061 - anaerobic respiration
|
|
Function
|
enzyme; Energy metabolism, carbon: Anaerobic respiration
|
|
Gene Ontology
|
GO:0005737
;
cytoplasm ( nirD )
GO:0006118
;
electron transport ( nirD )
GO:0008942
;
nitrite reductase [NAD(P)H] activity ( nirD )
GO:0016491
;
oxidoreductase activity ( nirD )
GO:0042128
;
nitrate assimilation ( nirD )
|
|
PID
|
1789766
|
EC number
(KEGG Pathway)
|
1.7.1.4
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
NIRD_ECOLI
(
P23675
)
|
|
- Protein name
|
Nitrite reductase [NAD(P)H] small subunit
|
|
- Synonyms
|
EC 1.7.1.4
|
|
- Gene name
|
Name=nirD; OrderedLocusNames=b3366, z4727, ECs4217;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
nirD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Nitrite reductase [NAD(P)H] small subunit
|
|
PSI-BLAST
|
Nitrite reductase [NAD(P)H] small subunit
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
nitrite reductase small subunit [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
GRAM_POS_ANCHORING
|
|
MMBR References
|
Mol Microbiol. 1992;6(19):2805-13.
Transcriptional control, translation and function of the products of the five open reading frames of the Escherichia coli nir operon.
Harborne NR, Griffiths L, Busby SJ, Cole JA.
(
1435259
)
|
Eur J Biochem. 1990;191:315-323
Nucleotide sequence, organisation and structural analysis of the products of genes in the nirB-cysG region of the Escherichia coli K-12 chromosome.
Peakman, T. C., J. Crouzet, J.-F. Mayaux, S. J. Busby, S. Mohan, N. Harborne, J. C. Wootton, R. Nicolson, and J. A. Cole.
|
| Sequences |
Amino acid
FASTA format
|
0001 MSQWKDICKI DDILPETGVC ALLGDEQVAI FRPYHSDQVF AISNIDPFFE SSVLSRGLIA EHQGELWVAS
0071 PLKKQRFRLS DGLCMEDEQF SVKHYEARVK DGVVQLRG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ACAAGCGTGA CCCGAACGTG CAGATGGTGC
-070 CAGAGCGCGA ACAGCACCGT CCGGCAACGC CGTATGAACG TATCCCAGTA ACTCTGGTGG AGGACAACGC
0001 atgagccagt ggaaagacat ctgcaaaatc gatgacatcc tgcctgaaac cggcgtctgc gcgctgttag
0071 gtgacgagca ggtcgcgatt ttccgcccgt atcacagcga tcaggtgttt gcgatcagca acatcgaccc
0141 gttcttcgag tccagcgtgc tgtcacgcgg actgattgcg gaacaccagg gcgagctgtg ggtcgccagc
0211 ccgctgaaaa aacagcgttt tcgcttaagc gacggcttgt gcatggaaga cgaacagttt tccgtcaaac
0281 attacgaagc gcgagtgaaa gacggcgtgg tgcagctgcg cggttaaTGT TTTAACGGGA GGCGCAATGC
0351 CTCCCCTTTT TGCATGGTCC TGTAATAATC TTCGGTATAT TGCAGGACAT TTTTTAAACT TTTTGTTTTA
0421 TTTTTTG
|
