PEC Original Annotations
|
Essentiality
|
Class
|
non-essential
|
References (PMID)
|
|
Deletion
|
OCL22
(D)
,
OCL22-1
(D)
,
OCL22-6
(D)
|
Related gene (W3110 PEC)
|
Gene Search
|
Search MG1655 PEC by gene name:
gspM
|
Related strains
|
Strains Search
|
Search strains by gene name:
gspM
Search strains by all related name:
gspM b3334 ECK3321 hopZ JW5704 o161 pshM
|
General information (Go to Linear View:)
|
Gene Name
|
gspM
|
Alternative name
|
b3334,ECK3321,hopZ,JW5704,o161,pshM
|
Location, Length
|
3,463,104 - 3,463,565
(
+
)
;
74.64
min
;
462
(bp) ,
153
(aa)
|
Product
|
general secretory pathway component, cryptic
|
Operon Name
|
gspCDEFGHIJKLMO
|
Note
|
|
Function
|
putative transport; Not classified
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( pshM )
GO:0006810
;
transport ( pshM )
GO:0006858
;
extracellular transport ( pshM )
GO:0016020
;
membrane ( pshM )
GO:0016021
;
integral to membrane ( pshM )
|
PID
|
87082245
|
EC number
(KEGG Pathway)
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
GSPM_ECOLI
(
P36678
)
|
- Protein name
|
Putative general secretion pathway protein M
|
- Synonyms
|
Transport protein pshM
|
- Gene name
|
Name=pshM; Synonyms=hopZ; OrderedLocusNames=b3334;
|
Homology Analysis
|
BLAST
|
Bacteria
|
GTOP
|
gspM
(
homologous genes of other bacterias
)
|
PDB
(database updated :
2007.02.20
)
|
PSI-BLAST
|
Chain , Human Procarboxypeptidase A2
|
SWISS-PROT
(database updated :
2007.02.20
)
|
BLAST
|
Putative general secretion pathway protein M
|
PSI-BLAST
|
Putative general secretion pathway protein M
|
nr
(database updated :
2007.02.20
)
|
BLAST
|
probable general secretion pathway protein m - Escherichia coli (strain K-12)
|
Pfam 28.0
(database updated :
2015-05
)
|
Pfam
|
|
PROSITE
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
|
Sequences |
Amino acid
FASTA format
|
0001 MIKSWWAEKS TSEKQIVAAL AVLSLGVFCW LGVIKPIDTY IAEHQSHAQK IKKDIKWMQD QASTHGLLGH
0071 PALTQPIKNI LLEEAKRENL AITLENGPDN TLTIHPVTAP LENVSRWLTT AQVTYGIVIE DLQFTLAGNE
0141 EITLRHLSFR EQQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATATCGATCG TTTCTGTGAG TTAACACAGT
-070 CCTGGCTTCC GATGGAAAAA ACAGAAAAAG ATCCGGTCAG TGGTGTATGG ACAGTAAGGA ACTCAGGGAA
0001 atgattaaat catggtgggc agaaaaatcc acatcggaaa aacagatcgt tgcggcactg gcggttctct
0071 cgctcggcgt tttttgttgg cttggggtga taaaaccgat agatacctac attgcagagc atcagtccca
0141 cgcgcaaaaa attaagaagg acatcaaatg gatgcaggat caagcgagca cccatggttt actcggtcat
0211 cctgcgctta cgcagcccat caaaaatatc cttctcgagg aagcaaaacg tgagaatttg gctatcacgc
0281 tggaaaacgg cccggacaat actctgacaa ttcatcctgt cacagctccc ctcgaaaacg tctcccgctg
0351 gctcactacg gcacaggtaa catacggtat tgttattgaa gaccttcagt ttactcttgc cggaaacgaa
0421 gagatcaccc tcaggcattt gtccttcagg gagcaacaat aaTGACAATG CTACTGCCGC TCTTCATTCT
0491 GGTTGGTTTT ATTGCAGATT ATTTTGTTAA TGCCATCGCC TATCACCTCT CGCCGTTGGA GGATAAAACG
0561 GC
|